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Pseudogene : AOP2 A. thaliana

DB identifier  AT4G03060 Secondary Identifier  locus:2139380
Brief Description  pseudogene
TAIR Computational Description  pseudogene of 2-oxoglutarate-dependent dioxygenase;(source:Araport11)
TAIR Curator Summary  Encodes a truncated and null function protein, due to a 5-bp deletion in cDNA. The functional allele in ecotype Cvi, AOP2, encodes a 2-oxoglutarate-dependent dioxygenase which is involved in glucosinolate biosynthesis. The natural variation in this locus explains the diversification of alkenyl glucosinolate among different ecotypes of Arabidopsis.
TAIR Short Description  AOP2 (ALKENYL HYDROXALKYL PRODUCING 2); oxidoreductase, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors
TAIR Aliases  AOP2

2 Gene Rifs

1 Organism

21 Publications

Genomics

Genome feature

Region: pseudogene ? Length: 2409  
Location: Chr4:1351688-1354096 reverse strand

Gene models -

? Gene models

No results

Overlapping Features

? Genome features that overlap coordinates of this Pseudogene

2 Child Features

0 Cross References

1 Downstream Intergenic Region

1 Upstream Intergenic Region

Proteins

Curated comments from UniProt

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Function

Gene Ontology

cellular component
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molecular function
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biological process
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Interactions

Interaction Network

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Expression

eFP Visualization

Data Source: BAR




Co-expression

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Data Source: ATTED-II
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LS: LS is a monotonic transformation (negative logit) of MR index. Larger LS indicates stronger co-expression.

 

Homology

Phytozome Homologs

Data Source: Phytozome


54 Homologues

 

Other

7 Data Sets

2 Pseudogenic Transcripts