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Genomics
Overlapping Features
Genome features that overlap coordinates of this Gene
CDSs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT4G02430:CDS:2 | 147 | Chr4: 1069377-1069523 | Arabidopsis thaliana |
AT4G02430:CDS:4 | 75 | Chr4: 1069666-1069740 | Arabidopsis thaliana |
AT4G02430:CDS:5 | 136 | Chr4: 1069832-1069967 | Arabidopsis thaliana |
AT4G02430:CDS:6 | 47 | Chr4: 1070046-1070092 | Arabidopsis thaliana |
AT4G02430:CDS:7 | 58 | Chr4: 1070181-1070238 | Arabidopsis thaliana |
AT4G02430:CDS:8 | 50 | Chr4: 1070368-1070417 | Arabidopsis thaliana |
AT4G02430:CDS:10 | 48 | Chr4: 1070536-1070583 | Arabidopsis thaliana |
AT4G02430:CDS:11 | 230 | Chr4: 1070657-1070886 | Arabidopsis thaliana |
AT4G02430:CDS:13 | 40 | Chr4: 1071274-1071313 | Arabidopsis thaliana |
AT4G02430:CDS:1 | 87 | Chr4: 1069186-1069272 | Arabidopsis thaliana |
AT4G02430:CDS:3 | 66 | Chr4: 1069458-1069523 | Arabidopsis thaliana |
AT4G02430:CDS:4.1 | 75 | Chr4: 1069666-1069740 | Arabidopsis thaliana |
AT4G02430:CDS:5.1 | 136 | Chr4: 1069832-1069967 | Arabidopsis thaliana |
AT4G02430:CDS:6.1 | 47 | Chr4: 1070046-1070092 | Arabidopsis thaliana |
AT4G02430:CDS:7.1 | 58 | Chr4: 1070181-1070238 | Arabidopsis thaliana |
AT4G02430:CDS:8.1 | 50 | Chr4: 1070368-1070417 | Arabidopsis thaliana |
AT4G02430:CDS:10.1 | 48 | Chr4: 1070536-1070583 | Arabidopsis thaliana |
AT4G02430:CDS:12 | 252 | Chr4: 1070657-1070908 | Arabidopsis thaliana |
AT4G02430:CDS:1.1 | 87 | Chr4: 1069186-1069272 | Arabidopsis thaliana |
AT4G02430:CDS:3.1 | 66 | Chr4: 1069458-1069523 | Arabidopsis thaliana |
AT4G02430:CDS:4.2 | 75 | Chr4: 1069666-1069740 | Arabidopsis thaliana |
AT4G02430:CDS:5.2 | 136 | Chr4: 1069832-1069967 | Arabidopsis thaliana |
AT4G02430:CDS:6.2 | 47 | Chr4: 1070046-1070092 | Arabidopsis thaliana |
AT4G02430:CDS:7.2 | 58 | Chr4: 1070181-1070238 | Arabidopsis thaliana |
AT4G02430:CDS:8.2 | 50 | Chr4: 1070368-1070417 | Arabidopsis thaliana |
AT4G02430:CDS:10.2 | 48 | Chr4: 1070536-1070583 | Arabidopsis thaliana |
AT4G02430:CDS:11.1 | 230 | Chr4: 1070657-1070886 | Arabidopsis thaliana |
AT4G02430:CDS:14 | 82 | Chr4: 1071285-1071366 | Arabidopsis thaliana |
AT4G02430:CDS:1.2 | 87 | Chr4: 1069186-1069272 | Arabidopsis thaliana |
AT4G02430:CDS:3.2 | 66 | Chr4: 1069458-1069523 | Arabidopsis thaliana |
Exons
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT4G02430:exon:4 | 349 | Chr4: 1069175-1069523 | Arabidopsis thaliana |
AT4G02430:exon:18 | 181 | Chr4: 1072003-1072183 | Arabidopsis thaliana |
AT4G02430:exon:14 | 1018 | Chr4: 1070657-1071674 | Arabidopsis thaliana |
AT4G02430:exon:1 | 37 | Chr4: 1068974-1069010 | Arabidopsis thaliana |
AT4G02430:exon:12 | 48 | Chr4: 1070536-1070583 | Arabidopsis thaliana |
AT4G02430:exon:16 | 390 | Chr4: 1071285-1071674 | Arabidopsis thaliana |
AT4G02430:exon:19 | 221 | Chr4: 1072003-1072223 | Arabidopsis thaliana |
AT4G02430:exon:2 | 108 | Chr4: 1068974-1069081 | Arabidopsis thaliana |
AT4G02430:exon:3 | 98 | Chr4: 1069175-1069272 | Arabidopsis thaliana |
AT4G02430:exon:5 | 66 | Chr4: 1069458-1069523 | Arabidopsis thaliana |
AT4G02430:exon:6 | 75 | Chr4: 1069666-1069740 | Arabidopsis thaliana |
AT4G02430:exon:7 | 136 | Chr4: 1069832-1069967 | Arabidopsis thaliana |
AT4G02430:exon:8 | 47 | Chr4: 1070046-1070092 | Arabidopsis thaliana |
AT4G02430:exon:9 | 58 | Chr4: 1070181-1070238 | Arabidopsis thaliana |
AT4G02430:exon:10 | 50 | Chr4: 1070368-1070417 | Arabidopsis thaliana |
AT4G02430:exon:11 | 58 | Chr4: 1070526-1070583 | Arabidopsis thaliana |
AT4G02430:exon:13 | 230 | Chr4: 1070657-1070886 | Arabidopsis thaliana |
AT4G02430:exon:15 | 401 | Chr4: 1071274-1071674 | Arabidopsis thaliana |
AT4G02430:exon:17 | 86 | Chr4: 1071843-1071928 | Arabidopsis thaliana |
AT4G02430:exon:20 | 261 | Chr4: 1072003-1072263 | Arabidopsis thaliana |
Five Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT4G02430:five_prime_UTR:4 | 202 | Chr4: 1069175-1069376 | Arabidopsis thaliana |
AT4G02430:five_prime_UTR:1 | 37 | Chr4: 1068974-1069010 | Arabidopsis thaliana |
AT4G02430:five_prime_UTR:2 | 108 | Chr4: 1068974-1069081 | Arabidopsis thaliana |
AT4G02430:five_prime_UTR:3 | 11 | Chr4: 1069175-1069185 | Arabidopsis thaliana |
mRNAs
DB identifier | Length | Chromosome Location |
---|---|---|
AT4G02430.2 | 1698 | Chr4: 1068974-1072183 |
AT4G02430.3 | 1940 | Chr4: 1068974-1072223 |
AT4G02430.4 | 1542 | Chr4: 1068974-1072223 |
AT4G02430.1 | 1674 | Chr4: 1068974-1072263 |
Three Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT4G02430:three_prime_UTR:5 | 361 | Chr4: 1071314-1071674 | Arabidopsis thaliana |
AT4G02430:three_prime_UTR:8 | 181 | Chr4: 1072003-1072183 | Arabidopsis thaliana |
AT4G02430:three_prime_UTR:3 | 766 | Chr4: 1070909-1071674 | Arabidopsis thaliana |
AT4G02430:three_prime_UTR:6 | 308 | Chr4: 1071367-1071674 | Arabidopsis thaliana |
AT4G02430:three_prime_UTR:9 | 221 | Chr4: 1072003-1072223 | Arabidopsis thaliana |
AT4G02430:three_prime_UTR:1 | 40 | Chr4: 1070544-1070583 | Arabidopsis thaliana |
AT4G02430:three_prime_UTR:2 | 230 | Chr4: 1070657-1070886 | Arabidopsis thaliana |
AT4G02430:three_prime_UTR:4 | 401 | Chr4: 1071274-1071674 | Arabidopsis thaliana |
AT4G02430:three_prime_UTR:7 | 86 | Chr4: 1071843-1071928 | Arabidopsis thaliana |
AT4G02430:three_prime_UTR:10 | 261 | Chr4: 1072003-1072263 | Arabidopsis thaliana |
Proteins
Curated comments from UniProt
Type | Comment | Proteins |
---|---|---|
SR34B_ARATH SR34B_ARATH-2 SR34B_ARATH-3 | function | Probably involved in intron recognition and spliceosome assembly. |
SR34B_ARATH SR34B_ARATH-2 SR34B_ARATH-3 | similarity | Belongs to the splicing factor SR family. SR subfamily. |
Function
Gene Ontology
cellular component | |
---|---|
spliceosomal complex | ECO |
nuclear speck | ECO |
molecular function | |
RNA binding | ECO |
biological process | |
RNA splicing | ECO |
mRNA processing | ECO |
Expression
Co-expression
Querying ATTED Service...
Data Source: ATTED-II |
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Top N
LS: LS is a monotonic transformation (negative logit) of MR index. Larger LS indicates stronger co-expression.
Waiting for results...