External Links
- Aracyc
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- Plant Proteome Database
- SUBA
- Gramene
- GeneVisible
- ABRC
- TAIR
- EnsemblPlants
- PGDD
- AtcisDB
- Plaza
- pep2pro
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- Agrisera Antibodies
- ATTED-II
- T-DNA Express
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Genomics
Overlapping Features
Genome features that overlap coordinates of this Gene
CDSs: 19, Exons: 13, Five Prime UTRs: 8, mRNAs: 5, Three Prime UTRs: 3, Transposable Elements: 3, Transposon Fragments: 3
CDSs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT4G00420:CDS:6 | 229 | Chr4: 181518-181746 | Arabidopsis thaliana |
AT4G00420:CDS:4 | 112 | Chr4: 181841-181952 | Arabidopsis thaliana |
AT4G00420:CDS:2 | 178 | Chr4: 182243-182420 | Arabidopsis thaliana |
AT4G00420:CDS:1 | 54 | Chr4: 182576-182629 | Arabidopsis thaliana |
AT4G00420:CDS:6.1 | 229 | Chr4: 181518-181746 | Arabidopsis thaliana |
AT4G00420:CDS:4.1 | 112 | Chr4: 181841-181952 | Arabidopsis thaliana |
AT4G00420:CDS:2.1 | 178 | Chr4: 182243-182420 | Arabidopsis thaliana |
AT4G00420:CDS:1.1 | 54 | Chr4: 182576-182629 | Arabidopsis thaliana |
AT4G00420:CDS:6.2 | 229 | Chr4: 181518-181746 | Arabidopsis thaliana |
AT4G00420:CDS:4.2 | 112 | Chr4: 181841-181952 | Arabidopsis thaliana |
AT4G00420:CDS:2.2 | 178 | Chr4: 182243-182420 | Arabidopsis thaliana |
AT4G00420:CDS:1.2 | 54 | Chr4: 182576-182629 | Arabidopsis thaliana |
AT4G00420:CDS:6.3 | 229 | Chr4: 181518-181746 | Arabidopsis thaliana |
AT4G00420:CDS:5 | 109 | Chr4: 181841-181949 | Arabidopsis thaliana |
AT4G00420:CDS:2.3 | 178 | Chr4: 182243-182420 | Arabidopsis thaliana |
AT4G00420:CDS:1.3 | 54 | Chr4: 182576-182629 | Arabidopsis thaliana |
AT4G00420:CDS:6.4 | 229 | Chr4: 181518-181746 | Arabidopsis thaliana |
AT4G00420:CDS:4.3 | 112 | Chr4: 181841-181952 | Arabidopsis thaliana |
AT4G00420:CDS:3 | 166 | Chr4: 182243-182408 | Arabidopsis thaliana |
Exons
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT4G00420:exon:13 | 480 | Chr4: 181267-181746 | Arabidopsis thaliana |
AT4G00420:exon:5 | 412 | Chr4: 183982-184393 | Arabidopsis thaliana |
AT4G00420:exon:3 | 418 | Chr4: 184052-184469 | Arabidopsis thaliana |
AT4G00420:exon:12 | 473 | Chr4: 181274-181746 | Arabidopsis thaliana |
AT4G00420:exon:1 | 220 | Chr4: 184250-184469 | Arabidopsis thaliana |
AT4G00420:exon:10 | 109 | Chr4: 181841-181949 | Arabidopsis thaliana |
AT4G00420:exon:7 | 120 | Chr4: 182576-182695 | Arabidopsis thaliana |
AT4G00420:exon:4 | 168 | Chr4: 184052-184219 | Arabidopsis thaliana |
AT4G00420:exon:11 | 424 | Chr4: 181323-181746 | Arabidopsis thaliana |
AT4G00420:exon:9 | 112 | Chr4: 181841-181952 | Arabidopsis thaliana |
AT4G00420:exon:8 | 178 | Chr4: 182243-182420 | Arabidopsis thaliana |
AT4G00420:exon:6 | 80 | Chr4: 183300-183379 | Arabidopsis thaliana |
AT4G00420:exon:2 | 138 | Chr4: 184250-184387 | Arabidopsis thaliana |
Five Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT4G00420:five_prime_UTR:5 | 412 | Chr4: 183982-184393 | Arabidopsis thaliana |
AT4G00420:five_prime_UTR:3 | 418 | Chr4: 184052-184469 | Arabidopsis thaliana |
AT4G00420:five_prime_UTR:1 | 220 | Chr4: 184250-184469 | Arabidopsis thaliana |
AT4G00420:five_prime_UTR:7 | 66 | Chr4: 182630-182695 | Arabidopsis thaliana |
AT4G00420:five_prime_UTR:4 | 168 | Chr4: 184052-184219 | Arabidopsis thaliana |
AT4G00420:five_prime_UTR:8 | 12 | Chr4: 182409-182420 | Arabidopsis thaliana |
AT4G00420:five_prime_UTR:6 | 80 | Chr4: 183300-183379 | Arabidopsis thaliana |
AT4G00420:five_prime_UTR:2 | 138 | Chr4: 184250-184387 | Arabidopsis thaliana |
mRNAs
DB identifier | Length | Chromosome Location |
---|---|---|
AT4G00420.4 | 1382 | Chr4: 181267-184393 |
AT4G00420.5 | 1381 | Chr4: 181274-184469 |
AT4G00420.2 | 1183 | Chr4: 181274-184469 |
AT4G00420.1 | 1079 | Chr4: 181323-184219 |
AT4G00420.3 | 932 | Chr4: 181323-184387 |
Three Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT4G00420:three_prime_UTR:3 | 251 | Chr4: 181267-181517 | Arabidopsis thaliana |
AT4G00420:three_prime_UTR:2 | 244 | Chr4: 181274-181517 | Arabidopsis thaliana |
AT4G00420:three_prime_UTR:1 | 195 | Chr4: 181323-181517 | Arabidopsis thaliana |
Transposable Elements
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT4TE00940 | 82 | Chr4: 184157-184238 | Arabidopsis thaliana |
AT4TE00945 | 136 | Chr4: 184239-184374 | Arabidopsis thaliana |
AT4TE00950 | 1138 | Chr4: 184375-185512 | Arabidopsis thaliana |
Transposon Fragments
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT4TE00940:transposon_fragment:1 | 82 | Chr4: 184157-184238 | Arabidopsis thaliana |
AT4TE00945:transposon_fragment:1 | 136 | Chr4: 184239-184374 | Arabidopsis thaliana |
AT4TE00950:transposon_fragment:1 | 1138 | Chr4: 184375-185512 | Arabidopsis thaliana |
Function
Gene Ontology
cellular component | |
---|---|
No terms in this category. | |
molecular function | |
RNA binding | ECO |
biological process | |
No terms in this category. |
Interactions
Interaction Network
Show the following interaction types:
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Expression
Co-expression
Querying ATTED Service...
Data Source: ATTED-II |
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Top N
LS: LS is a monotonic transformation (negative logit) of MR index. Larger LS indicates stronger co-expression.
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