help  | faq  | software  | BAR
Hide

Oops!

Error: 403
Hide

Oops!

https://bar.utoronto.ca/thalemine/service/ is incorrect
Hide Your session has expired. If you were not logged in, your data (including query history and any lists you made) has been cleared.Your session has expired. If you were not logged in, your data (including query history and any lists you made) has been cleared.

Gene : JLO A. thaliana

DB identifier  ? AT4G00220 Secondary Identifier  ? locus:2126881
Name  ? JAGGED LATERAL ORGANS Brief Description  Lateral organ boundaries (LOB) domain family protein
TAIR Computational Description  Lateral organ boundaries (LOB) domain family protein;(source:Araport11)
TAIR Curator Summary  Encodes a protein containing a LOB domain that is expressed in embryos, flower primordium and lateral floral organ boundaries. Overexpression is correlated with activation of STM and KNAT1 and down regulation of PIN1 and reduced auxin transport levels. Ectopic expression in plants results in premature termination of the shoot apical meristem and small, lobed leaves. A maternally expressed imprinted gene.
TAIR Short Description  Lateral organ boundaries (LOB) domain family protein
TAIR Aliases  ASL19, JLO, LBD30

7 Gene Rifs

1 Organism

19 Publications

0 Synonyms

Genomics

Genome feature

Region: gene ? Length: 2348  
Location: Chr4:89908-92255

Gene models - JLO AT4G00220

? Gene models

Transcripts: 1  Exons: 2  Introns: 1 

Overlapping Features

? Genome features that overlap coordinates of this Gene

3 Child Features

1 Cross References

1 Downstream Intergenic Region

0 Located Features

1 Upstream Intergenic Region

Proteins

Curated comments from UniProt

Type Comment Proteins
LBD30_ARATH function Involved in the positive regulation of tracheary element (TE) differentiation. Involved in a positive feedback loop that maintains or promotes NAC030/VND7 expression that regulates TE differentiation-related genes.
LBD30_ARATH similarity Belongs to the LOB domain-containing protein family.
LBD30_ARATH tissue specificity Expressed in roots, stems, leaves and flowers (PubMed:12068116). Expressed in vascular tissues of hypocotyls, leaves, roots, developing floral organs and siliques (PubMed:19088331).

1 Proteins

Function

Gene Ontology

cellular component
No terms in this category.
molecular function
No terms in this category.
biological process
xylem development  ? ECO  
organ boundary specification between lateral organs and the meristem  ? ECO  

Interactions

Interaction Network

Show the following interaction types:
Reset view
Show in table format
Export graph

Click on a gene to get more info about it.

Expression

eFP Visualization

Data Source: BAR




Co-expression

Querying ATTED Service...
Data Source: ATTED-II
Top N
LS: LS is a monotonic transformation (negative logit) of MR index. Larger LS indicates stronger co-expression.

 

Homology

Phytozome Homologs

Data Source: Phytozome


0 Homologues

 

Other

9 Data Sets