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Gene : CSP41A A. thaliana

DB identifier  ? AT3G63140 Secondary Identifier  ? locus:2099222
Name  ? chloroplast stem-loop binding protein of 41 kDa Brief Description  chloroplast stem-loop binding protein of 41 kDa
TAIR Computational Description  chloroplast stem-loop binding protein of 41 kDa;(source:Araport11)
TAIR Curator Summary  Encodes a protein with ribonuclease activity that is involved in plastid rRNA maturation.
TAIR Short Description  chloroplast stem-loop binding protein of 41 kDa
TAIR Aliases  CSP41A

1 Gene Rifs

1 Organism

32 Publications

0 Synonyms

Genomics

Genome feature

Region: gene ? Length: 1923  
Location: Chr3:23326867-23328789 reverse strand

Gene models - CSP41A AT3G63140

? Gene models

Transcripts: 1  Exons: 6  Introns: 5 

Overlapping Features

? Genome features that overlap coordinates of this Gene

7 Child Features

1 Cross References

0 Downstream Intergenic Region

0 Located Features

1 Upstream Intergenic Region

Proteins

Curated comments from UniProt

Type Comment Proteins
CP41A_ARATH function Binds and cleaves RNA, particularly in stem-loops. Associates with pre-ribosomal particles in chloroplasts, and participates in chloroplast ribosomal RNA metabolism, probably during the final steps of 23S rRNA maturation. May enhance transcription by the plastid-encoded polymerase and translation in plastid via the stabilization of ribosome assembly intermediates. Required for chloroplast integrity. Involved in the regulation of the circadian system.
CP41A_ARATH similarity Belongs to the NAD(P)-dependent epimerase/dehydratase family.
CP41A_ARATH subcellular location Present in stromules.

1 Proteins

Function

Gene Ontology

cellular component
chloroplast stroma  ? ECO  
apoplast  ? ECO  
chloroplast envelope  ? ECO  
plastoglobule  ? ECO  
ribosome  ? ECO  
chloroplast thylakoid  ? ECO  
stromule  ? ECO  
cytosol  ? ECO  
chloroplast  ? ECO  
thylakoid  ? ECO  
molecular function
mRNA binding  ? ECO  
poly(U) RNA binding  ? ECO  
RNA binding  ? ECO  
rRNA binding  ? ECO  
biological process
positive regulation of DNA-templated transcription  ? ECO  
circadian rhythm  ? ECO  
rRNA processing  ? ECO  
chloroplast organization  ? ECO  
positive regulation of translation  ? ECO  
plastid translation  ? ECO  

Interactions

Interaction Network

Expression

eFP Visualization

Data Source: BAR




Co-expression

Querying ATTED Service...
Data Source: ATTED-II
Top N
LS: LS is a monotonic transformation (negative logit) of MR index. Larger LS indicates stronger co-expression.

 

Homology

Phytozome Homologs

Data Source: Phytozome


0 Homologues

 

Other

8 Data Sets