External Links
- Aracyc
- AceView
- Plant Proteome Database
- SUBA
- Gramene
- GeneVisible
- ABRC
- TAIR
- EnsemblPlants
- PGDD
- AtcisDB
- Plaza
- pep2pro
- NCBI-Entrez
- PIR
- AtGDB
- Agrisera Antibodies
- ATTED-II
- T-DNA Express
- AtGenExpress
- AthaMap
- Phytozome
Genomics
Overlapping Features
Genome features that overlap coordinates of this Gene
Antisense lncRNAs: 5, CDSs: 17, Exons: 14, Five Prime UTRs: 2, Genes: 3, mRNAs: 5, Three Prime UTRs: 2
Antisense lncRNAs
DB identifier | Length | Chromosome Location |
---|---|---|
AT3G09725.1 | 289 | Chr3: 22987239-22987527 |
AT3G09745.1 | 1063 | Chr3: 22988627-22990291 |
AT3G09745.2 | 1888 | Chr3: 22988627-22990967 |
AT3G09745.3 | 1762 | Chr3: 22988627-22990967 |
AT3G09745.4 | 1613 | Chr3: 22988627-22990967 |
CDSs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT3G62080:CDS:1 | 114 | Chr3: 22986191-22986304 | Arabidopsis thaliana |
AT3G62080:CDS:2 | 195 | Chr3: 22986380-22986574 | Arabidopsis thaliana |
AT3G62080:CDS:4 | 60 | Chr3: 22986667-22986726 | Arabidopsis thaliana |
AT3G62080:CDS:5 | 168 | Chr3: 22986806-22986973 | Arabidopsis thaliana |
AT3G62080:CDS:6 | 183 | Chr3: 22987079-22987261 | Arabidopsis thaliana |
AT3G62080:CDS:7 | 131 | Chr3: 22987506-22987636 | Arabidopsis thaliana |
AT3G62080:CDS:8 | 169 | Chr3: 22987790-22987958 | Arabidopsis thaliana |
AT3G62080:CDS:9 | 130 | Chr3: 22988061-22988190 | Arabidopsis thaliana |
AT3G62080:CDS:10 | 239 | Chr3: 22988279-22988517 | Arabidopsis thaliana |
AT3G62080:CDS:3 | 192 | Chr3: 22986383-22986574 | Arabidopsis thaliana |
AT3G62080:CDS:4.1 | 60 | Chr3: 22986667-22986726 | Arabidopsis thaliana |
AT3G62080:CDS:5.1 | 168 | Chr3: 22986806-22986973 | Arabidopsis thaliana |
AT3G62080:CDS:6.1 | 183 | Chr3: 22987079-22987261 | Arabidopsis thaliana |
AT3G62080:CDS:7.1 | 131 | Chr3: 22987506-22987636 | Arabidopsis thaliana |
AT3G62080:CDS:8.1 | 169 | Chr3: 22987790-22987958 | Arabidopsis thaliana |
AT3G62080:CDS:9.1 | 130 | Chr3: 22988061-22988190 | Arabidopsis thaliana |
AT3G62080:CDS:10.1 | 239 | Chr3: 22988279-22988517 | Arabidopsis thaliana |
Exons
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT3G62080:exon:1 | 131 | Chr3: 22986174-22986304 | Arabidopsis thaliana |
AT3G62080:exon:3 | 195 | Chr3: 22986380-22986574 | Arabidopsis thaliana |
AT3G62080:exon:2 | 399 | Chr3: 22986176-22986574 | Arabidopsis thaliana |
AT3G62080:exon:4 | 60 | Chr3: 22986667-22986726 | Arabidopsis thaliana |
AT3G62080:exon:5 | 168 | Chr3: 22986806-22986973 | Arabidopsis thaliana |
AT3G62080:exon:6 | 183 | Chr3: 22987079-22987261 | Arabidopsis thaliana |
AT3G62080:exon:7 | 131 | Chr3: 22987506-22987636 | Arabidopsis thaliana |
AT3G62080:exon:8 | 169 | Chr3: 22987790-22987958 | Arabidopsis thaliana |
AT3G62080:exon:9 | 130 | Chr3: 22988061-22988190 | Arabidopsis thaliana |
AT3G62080:exon:10 | 499 | Chr3: 22988279-22988777 | Arabidopsis thaliana |
AT3G09725:exon:1 | 289 | Chr3: 22987239-22987527 | Arabidopsis thaliana |
AT3G62090:exon:8 | 916 | Chr3: 22988547-22989462 | Arabidopsis thaliana |
AT3G09745:exon:2 | 858 | Chr3: 22988627-22989484 | Arabidopsis thaliana |
AT3G09745:exon:1 | 404 | Chr3: 22988627-22989030 | Arabidopsis thaliana |
Five Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT3G62080:five_prime_UTR:1 | 17 | Chr3: 22986174-22986190 | Arabidopsis thaliana |
AT3G62080:five_prime_UTR:2 | 207 | Chr3: 22986176-22986382 | Arabidopsis thaliana |
Genes
DB identifier | Secondary Identifier | Symbol | Name | Length | Chromosome Location |
Organism . Short Name |
TAIR Computational Description | TAIR Curator Summary | TAIR Short Description | TAIR Aliases |
---|---|---|---|---|---|---|---|---|---|---|
AT3G09725 | AT3G09725 | 289 | Chr3: 22987239-22987527 | A. thaliana | Natural antisense transcript overlaps with AT3G62080;(source:Araport11) | NULL | ||||
AT3G62090 | locus:2098008 | PIL2 | phytochrome interacting factor 3-like 2 | 2163 | Chr3: 22988547-22990709 | A. thaliana | phytochrome interacting factor 3-like 2;(source:Araport11) | encodes a novel Myc-related bHLH transcription factor, which physically associated with APRR1/TOC1 and is a member of PIF3 transcription factor family. | phytochrome interacting factor 3-like 2 | PIF6, PIL2 |
AT3G09745 | AT3G09745 | 2341 | Chr3: 22988627-22990967 | A. thaliana | Natural antisense transcript overlaps with AT3G62090;(source:Araport11) | NULL |
mRNAs
DB identifier | Length | Chromosome Location |
---|---|---|
AT3G62080.2 | 1666 | Chr3: 22986174-22988777 |
AT3G62080.1 | 1739 | Chr3: 22986176-22988777 |
AT3G62090.2 | 1805 | Chr3: 22988547-22990709 |
AT3G62090.1 | 1680 | Chr3: 22988547-22990709 |
AT3G62090.3 | 1614 | Chr3: 22988547-22990709 |
Three Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT3G62080:three_prime_UTR:1 | 260 | Chr3: 22988518-22988777 | Arabidopsis thaliana |
AT3G62090:three_prime_UTR:1 | 550 | Chr3: 22988547-22989096 | Arabidopsis thaliana |
Function
Gene Ontology
cellular component | |
---|---|
No terms in this category. | |
molecular function | |
No terms in this category. | |
biological process | |
vacuolar transport | ECO |
Interactions
Interaction Network
Show the following interaction types:
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Expression
Co-expression
Querying ATTED Service...
Data Source: ATTED-II |
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Top N
LS: LS is a monotonic transformation (negative logit) of MR index. Larger LS indicates stronger co-expression.
Waiting for results...