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Genomics
Overlapping Features
Genome features that overlap coordinates of this Gene
CDSs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT3G60920:CDS:28 | 222 | Chr3: 22503328-22503549 | Arabidopsis thaliana |
AT3G60920:CDS:27 | 60 | Chr3: 22503629-22503688 | Arabidopsis thaliana |
AT3G60920:CDS:26 | 60 | Chr3: 22503768-22503827 | Arabidopsis thaliana |
AT3G60920:CDS:25 | 150 | Chr3: 22504106-22504255 | Arabidopsis thaliana |
AT3G60920:CDS:24 | 117 | Chr3: 22504443-22504559 | Arabidopsis thaliana |
AT3G60920:CDS:23 | 90 | Chr3: 22504663-22504752 | Arabidopsis thaliana |
AT3G60920:CDS:22 | 69 | Chr3: 22504845-22504913 | Arabidopsis thaliana |
AT3G60920:CDS:21 | 54 | Chr3: 22505017-22505070 | Arabidopsis thaliana |
AT3G60920:CDS:20 | 84 | Chr3: 22505191-22505274 | Arabidopsis thaliana |
AT3G60920:CDS:19 | 70 | Chr3: 22505380-22505449 | Arabidopsis thaliana |
AT3G60920:CDS:18 | 143 | Chr3: 22505551-22505693 | Arabidopsis thaliana |
AT3G60920:CDS:17 | 450 | Chr3: 22505829-22506278 | Arabidopsis thaliana |
AT3G60920:CDS:16 | 312 | Chr3: 22506490-22506801 | Arabidopsis thaliana |
AT3G60920:CDS:15 | 195 | Chr3: 22506915-22507109 | Arabidopsis thaliana |
AT3G60920:CDS:14 | 85 | Chr3: 22507293-22507377 | Arabidopsis thaliana |
AT3G60920:CDS:13 | 623 | Chr3: 22507648-22508270 | Arabidopsis thaliana |
AT3G60920:CDS:12 | 327 | Chr3: 22508428-22508754 | Arabidopsis thaliana |
AT3G60920:CDS:11 | 82 | Chr3: 22509009-22509090 | Arabidopsis thaliana |
AT3G60920:CDS:10 | 77 | Chr3: 22509308-22509384 | Arabidopsis thaliana |
AT3G60920:CDS:9 | 114 | Chr3: 22509492-22509605 | Arabidopsis thaliana |
AT3G60920:CDS:8 | 105 | Chr3: 22509783-22509887 | Arabidopsis thaliana |
AT3G60920:CDS:7 | 135 | Chr3: 22510009-22510143 | Arabidopsis thaliana |
AT3G60920:CDS:6 | 405 | Chr3: 22510306-22510710 | Arabidopsis thaliana |
AT3G60920:CDS:5 | 147 | Chr3: 22510791-22510937 | Arabidopsis thaliana |
AT3G60920:CDS:4 | 692 | Chr3: 22511042-22511733 | Arabidopsis thaliana |
AT3G60920:CDS:3 | 75 | Chr3: 22511849-22511923 | Arabidopsis thaliana |
AT3G60920:CDS:2 | 883 | Chr3: 22512149-22513031 | Arabidopsis thaliana |
AT3G60920:CDS:28.1 | 222 | Chr3: 22503328-22503549 | Arabidopsis thaliana |
AT3G60920:CDS:27.1 | 60 | Chr3: 22503629-22503688 | Arabidopsis thaliana |
AT3G60920:CDS:26.1 | 60 | Chr3: 22503768-22503827 | Arabidopsis thaliana |
Exons
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT3G60910:exon:10 | 396 | Chr3: 22502977-22503372 | Arabidopsis thaliana |
AT3G60920:exon:2 | 883 | Chr3: 22512149-22513031 | Arabidopsis thaliana |
AT3G60920:exon:28 | 222 | Chr3: 22503328-22503549 | Arabidopsis thaliana |
AT3G60920:exon:27 | 60 | Chr3: 22503629-22503688 | Arabidopsis thaliana |
AT3G60920:exon:26 | 60 | Chr3: 22503768-22503827 | Arabidopsis thaliana |
AT3G60920:exon:25 | 150 | Chr3: 22504106-22504255 | Arabidopsis thaliana |
AT3G60920:exon:24 | 117 | Chr3: 22504443-22504559 | Arabidopsis thaliana |
AT3G60920:exon:23 | 90 | Chr3: 22504663-22504752 | Arabidopsis thaliana |
AT3G60920:exon:22 | 69 | Chr3: 22504845-22504913 | Arabidopsis thaliana |
AT3G60920:exon:21 | 54 | Chr3: 22505017-22505070 | Arabidopsis thaliana |
AT3G60920:exon:20 | 84 | Chr3: 22505191-22505274 | Arabidopsis thaliana |
AT3G60920:exon:19 | 70 | Chr3: 22505380-22505449 | Arabidopsis thaliana |
AT3G60920:exon:18 | 143 | Chr3: 22505551-22505693 | Arabidopsis thaliana |
AT3G60920:exon:17 | 450 | Chr3: 22505829-22506278 | Arabidopsis thaliana |
AT3G60920:exon:16 | 312 | Chr3: 22506490-22506801 | Arabidopsis thaliana |
AT3G60920:exon:15 | 195 | Chr3: 22506915-22507109 | Arabidopsis thaliana |
AT3G60920:exon:14 | 85 | Chr3: 22507293-22507377 | Arabidopsis thaliana |
AT3G60920:exon:13 | 623 | Chr3: 22507648-22508270 | Arabidopsis thaliana |
AT3G60920:exon:12 | 327 | Chr3: 22508428-22508754 | Arabidopsis thaliana |
AT3G60920:exon:11 | 82 | Chr3: 22509009-22509090 | Arabidopsis thaliana |
AT3G60920:exon:10 | 77 | Chr3: 22509308-22509384 | Arabidopsis thaliana |
AT3G60920:exon:9 | 114 | Chr3: 22509492-22509605 | Arabidopsis thaliana |
AT3G60920:exon:8 | 105 | Chr3: 22509783-22509887 | Arabidopsis thaliana |
AT3G60920:exon:7 | 135 | Chr3: 22510009-22510143 | Arabidopsis thaliana |
AT3G60920:exon:6 | 405 | Chr3: 22510306-22510710 | Arabidopsis thaliana |
AT3G60920:exon:5 | 147 | Chr3: 22510791-22510937 | Arabidopsis thaliana |
AT3G60920:exon:4 | 692 | Chr3: 22511042-22511733 | Arabidopsis thaliana |
AT3G60920:exon:3 | 75 | Chr3: 22511849-22511923 | Arabidopsis thaliana |
AT3G60920:exon:1 | 1096 | Chr3: 22512149-22513244 | Arabidopsis thaliana |
Five Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT3G60920:five_prime_UTR:1 | 60 | Chr3: 22513185-22513244 | Arabidopsis thaliana |
Genes
DB identifier | Secondary Identifier | Symbol | Name | Length | Chromosome Location |
Organism . Short Name |
TAIR Computational Description | TAIR Curator Summary | TAIR Short Description | TAIR Aliases |
---|---|---|---|---|---|---|---|---|---|---|
AT3G60910 | locus:2101861 | AT3G60910 | 1829 | Chr3: 22501544-22503372 | A. thaliana | S-adenosyl-L-methionine-dependent methyltransferases superfamily protein;(source:Araport11) | NULL | S-adenosyl-L-methionine-dependent methyltransferases superfamily protein |
mRNAs
DB identifier | Length | Chromosome Location |
---|---|---|
AT3G60910.1 | 1132 | Chr3: 22501544-22503372 |
AT3G60920.1 | 5826 | Chr3: 22503328-22513031 |
AT3G60920.2 | 6039 | Chr3: 22503328-22513244 |
Three Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT3G60910:three_prime_UTR:1 | 190 | Chr3: 22503183-22503372 | Arabidopsis thaliana |
Proteins
Curated comments from UniProt
Type | Comment | Proteins |
---|---|---|
BCHC1_ARATH | function | May act as a negative factor in protein storage vacuole (PSV) trafficking regulation and plant effector triggered immunity (ETI). Negatively regulated upon interaction with GSF12, and also probably by BCHB. Required for ETI, but not for cell death. |
Function
Gene Ontology
cellular component | |
---|---|
plasmodesma | ECO |
molecular function | |
No terms in this category. | |
biological process | |
No terms in this category. |
Interactions
Interaction Network
Show the following interaction types:
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Expression
Co-expression
Querying ATTED Service...
Data Source: ATTED-II |
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Top N
LS: LS is a monotonic transformation (negative logit) of MR index. Larger LS indicates stronger co-expression.
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