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Gene : LSM6A A. thaliana

DB identifier  ? AT3G59810 Secondary Identifier  ? locus:2080487
Name  ? SM-like 6A Brief Description  Small nuclear ribonucleoprotein family protein
TAIR Computational Description  Small nuclear ribonucleoprotein family protein;(source:Araport11)
TAIR Curator Summary  NULL
TAIR Short Description  Small nuclear ribonucleoprotein family protein
TAIR Aliases  LSM6A

0 Gene Rifs

1 Organism

12 Publications

0 Synonyms

Genomics

Genome feature

Region: gene ? Length: 1498  
Location: Chr3:22096469-22097966

Gene models - LSM6A AT3G59810

? Gene models

Transcripts: 3  Exons: 11  Introns: 8 

Overlapping Features Displayer

11 Child Features

1 Cross References

1 Downstream Intergenic Region

0 Located Features

0 Upstream Intergenic Region

Proteins

Curated comments from UniProt

Type Comment Proteins
LSM6A_ARATH function Component of LSM protein complexes, which are involved in RNA processing. Component of the cytoplasmic LSM1-LSM7 complex which is involved in mRNA degradation by promoting decapping and leading to accurate 5'-3' mRNA decay. The cytoplasmic LSM1-LSM7 complex regulates developmental gene expression by the decapping of specific development-related transcripts. Component of the nuclear LSM2-LSM8 complex which is involved splicing nuclear mRNAs. LSM2-LSM8 binds directly to the U6 small nuclear RNAs (snRNAs) and is essential for accurate splicing of selected development-related mRNAs through the stabilization of the spliceosomal U6 snRNA. Plays a critical role in the regulation of development-related gene expression.
LSM6A_ARATH similarity Belongs to the snRNP Sm proteins family.
LSM6A_ARATH tissue specificity Expressed in roots, leaves, stems, flowers and siliques.

1 Proteins

Function

Gene Ontology

cellular component
Lsm1-7-Pat1 complex  ? ECO  
spliceosomal complex  ? ECO  
Lsm2-8 complex  ? ECO  
nucleus  ? ECO  
P-body  ? ECO  
molecular function
RNA binding  ? ECO  
biological process
deadenylation-dependent decapping of nuclear-transcribed mRNA  ? ECO  
mRNA splicing, via spliceosome  ? ECO  

Interactions

Interaction Network

Expression

eFP Visualization

Data Source: BAR




Co-expression

Querying ATTED Service...
Data Source: ATTED-II
Top N
LS: LS is a monotonic transformation (negative logit) of MR index. Larger LS indicates stronger co-expression.

 

Homology

Phytozome Homologs

Data Source: Phytozome


0 Homologues

 

Other

8 Data Sets