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Genomics
Overlapping Features
Genome features that overlap coordinates of this Gene
CDSs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT3G55080:CDS:18 | 150 | Chr3: 20411476-20411625 | Arabidopsis thaliana |
AT3G55080:CDS:17 | 149 | Chr3: 20411715-20411863 | Arabidopsis thaliana |
AT3G55080:CDS:16 | 89 | Chr3: 20411946-20412034 | Arabidopsis thaliana |
AT3G55080:CDS:15 | 134 | Chr3: 20412266-20412399 | Arabidopsis thaliana |
AT3G55080:CDS:14 | 84 | Chr3: 20412582-20412665 | Arabidopsis thaliana |
AT3G55080:CDS:13 | 36 | Chr3: 20412827-20412862 | Arabidopsis thaliana |
AT3G55080:CDS:11 | 81 | Chr3: 20413138-20413218 | Arabidopsis thaliana |
AT3G55080:CDS:10 | 41 | Chr3: 20413303-20413343 | Arabidopsis thaliana |
AT3G55080:CDS:9 | 73 | Chr3: 20413482-20413554 | Arabidopsis thaliana |
AT3G55080:CDS:8 | 108 | Chr3: 20414041-20414148 | Arabidopsis thaliana |
AT3G55080:CDS:7 | 60 | Chr3: 20414392-20414451 | Arabidopsis thaliana |
AT3G55080:CDS:5 | 111 | Chr3: 20414554-20414664 | Arabidopsis thaliana |
AT3G55080:CDS:3 | 64 | Chr3: 20414769-20414832 | Arabidopsis thaliana |
AT3G55080:CDS:2 | 95 | Chr3: 20415291-20415385 | Arabidopsis thaliana |
AT3G55080:CDS:1 | 117 | Chr3: 20415714-20415830 | Arabidopsis thaliana |
AT3G55080:CDS:18.1 | 150 | Chr3: 20411476-20411625 | Arabidopsis thaliana |
AT3G55080:CDS:17.1 | 149 | Chr3: 20411715-20411863 | Arabidopsis thaliana |
AT3G55080:CDS:16.1 | 89 | Chr3: 20411946-20412034 | Arabidopsis thaliana |
AT3G55080:CDS:15.1 | 134 | Chr3: 20412266-20412399 | Arabidopsis thaliana |
AT3G55080:CDS:14.1 | 84 | Chr3: 20412582-20412665 | Arabidopsis thaliana |
AT3G55080:CDS:13.1 | 36 | Chr3: 20412827-20412862 | Arabidopsis thaliana |
AT3G55080:CDS:11.1 | 81 | Chr3: 20413138-20413218 | Arabidopsis thaliana |
AT3G55080:CDS:10.1 | 41 | Chr3: 20413303-20413343 | Arabidopsis thaliana |
AT3G55080:CDS:9.1 | 73 | Chr3: 20413482-20413554 | Arabidopsis thaliana |
AT3G55080:CDS:8.1 | 108 | Chr3: 20414041-20414148 | Arabidopsis thaliana |
AT3G55080:CDS:7.1 | 60 | Chr3: 20414392-20414451 | Arabidopsis thaliana |
AT3G55080:CDS:5.1 | 111 | Chr3: 20414554-20414664 | Arabidopsis thaliana |
AT3G55080:CDS:4 | 24 | Chr3: 20414769-20414792 | Arabidopsis thaliana |
AT3G55080:CDS:18.2 | 150 | Chr3: 20411476-20411625 | Arabidopsis thaliana |
AT3G55080:CDS:17.2 | 149 | Chr3: 20411715-20411863 | Arabidopsis thaliana |
Exons
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT3G55070:exon:9 | 579 | Chr3: 20410786-20411364 | Arabidopsis thaliana |
AT3G55080:exon:5 | 95 | Chr3: 20415291-20415385 | Arabidopsis thaliana |
AT3G55080:exon:23 | 284 | Chr3: 20411342-20411625 | Arabidopsis thaliana |
AT3G55080:exon:1 | 330 | Chr3: 20415714-20416043 | Arabidopsis thaliana |
AT3G55080:exon:22 | 274 | Chr3: 20411352-20411625 | Arabidopsis thaliana |
AT3G55080:exon:2 | 259 | Chr3: 20415714-20415972 | Arabidopsis thaliana |
AT3G55080:exon:21 | 235 | Chr3: 20411391-20411625 | Arabidopsis thaliana |
AT3G55080:exon:15 | 36 | Chr3: 20412827-20412862 | Arabidopsis thaliana |
AT3G55080:exon:7 | 111 | Chr3: 20414554-20414664 | Arabidopsis thaliana |
AT3G55080:exon:4 | 225 | Chr3: 20415291-20415515 | Arabidopsis thaliana |
AT3G55080:exon:20 | 227 | Chr3: 20411399-20411625 | Arabidopsis thaliana |
AT3G55080:exon:19 | 149 | Chr3: 20411715-20411863 | Arabidopsis thaliana |
AT3G55080:exon:18 | 89 | Chr3: 20411946-20412034 | Arabidopsis thaliana |
AT3G55080:exon:17 | 134 | Chr3: 20412266-20412399 | Arabidopsis thaliana |
AT3G55080:exon:16 | 84 | Chr3: 20412582-20412665 | Arabidopsis thaliana |
AT3G55080:exon:14 | 51 | Chr3: 20412827-20412877 | Arabidopsis thaliana |
AT3G55080:exon:13 | 81 | Chr3: 20413138-20413218 | Arabidopsis thaliana |
AT3G55080:exon:12 | 41 | Chr3: 20413303-20413343 | Arabidopsis thaliana |
AT3G55080:exon:11 | 73 | Chr3: 20413482-20413554 | Arabidopsis thaliana |
AT3G55080:exon:10 | 108 | Chr3: 20414041-20414148 | Arabidopsis thaliana |
AT3G55080:exon:9 | 60 | Chr3: 20414392-20414451 | Arabidopsis thaliana |
AT3G55080:exon:8 | 98 | Chr3: 20414554-20414651 | Arabidopsis thaliana |
AT3G55080:exon:6 | 64 | Chr3: 20414769-20414832 | Arabidopsis thaliana |
AT3G55080:exon:3 | 221 | Chr3: 20415714-20415934 | Arabidopsis thaliana |
Five Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT3G55080:five_prime_UTR:1 | 213 | Chr3: 20415831-20416043 | Arabidopsis thaliana |
AT3G55080:five_prime_UTR:2 | 330 | Chr3: 20415714-20416043 | Arabidopsis thaliana |
AT3G55080:five_prime_UTR:3 | 259 | Chr3: 20415714-20415972 | Arabidopsis thaliana |
AT3G55080:five_prime_UTR:6 | 40 | Chr3: 20414793-20414832 | Arabidopsis thaliana |
AT3G55080:five_prime_UTR:5 | 225 | Chr3: 20415291-20415515 | Arabidopsis thaliana |
AT3G55080:five_prime_UTR:8 | 56 | Chr3: 20414596-20414651 | Arabidopsis thaliana |
AT3G55080:five_prime_UTR:7 | 64 | Chr3: 20414769-20414832 | Arabidopsis thaliana |
AT3G55080:five_prime_UTR:4 | 221 | Chr3: 20415714-20415934 | Arabidopsis thaliana |
Genes
DB identifier | Secondary Identifier | Symbol | Name | Length | Chromosome Location |
Organism . Short Name |
TAIR Computational Description | TAIR Curator Summary | TAIR Short Description | TAIR Aliases |
---|---|---|---|---|---|---|---|---|---|---|
AT3G55070 | locus:2097248 | AT3G55070 | 3091 | Chr3: 20408274-20411364 | A. thaliana | LisH/CRA/RING-U-box domains-containing protein;(source:Araport11) | NULL | LisH/CRA/RING-U-box domains-containing protein |
mRNAs
DB identifier | Length | Chromosome Location |
---|---|---|
AT3G55070.1 | 1837 | Chr3: 20408274-20411364 |
AT3G55070.2 | 1971 | Chr3: 20408282-20411364 |
AT3G55080.1 | 1739 | Chr3: 20411342-20416043 |
AT3G55080.3 | 1644 | Chr3: 20411342-20416043 |
AT3G55080.4 | 1550 | Chr3: 20411352-20415972 |
AT3G55080.5 | 1490 | Chr3: 20411391-20415515 |
AT3G55080.2 | 1480 | Chr3: 20411399-20415934 |
Three Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT3G55070:three_prime_UTR:3 | 477 | Chr3: 20410888-20411364 | Arabidopsis thaliana |
AT3G55070:three_prime_UTR:2 | 579 | Chr3: 20410786-20411364 | Arabidopsis thaliana |
AT3G55080:three_prime_UTR:4 | 134 | Chr3: 20411342-20411475 | Arabidopsis thaliana |
AT3G55080:three_prime_UTR:3 | 124 | Chr3: 20411352-20411475 | Arabidopsis thaliana |
AT3G55080:three_prime_UTR:2 | 85 | Chr3: 20411391-20411475 | Arabidopsis thaliana |
AT3G55080:three_prime_UTR:1 | 77 | Chr3: 20411399-20411475 | Arabidopsis thaliana |
Function
Gene Ontology
cellular component | |
---|---|
No terms in this category. | |
molecular function | |
protein-lysine N-methyltransferase activity | ECO |
biological process | |
peptidyl-lysine methylation | ECO |
Interactions
Interaction Network
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Expression
Co-expression
Querying ATTED Service...
Data Source: ATTED-II |
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Top N
LS: LS is a monotonic transformation (negative logit) of MR index. Larger LS indicates stronger co-expression.
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