External Links
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Genomics
Overlapping Features
Genome features that overlap coordinates of this Gene
CDSs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT3G54510:CDS:1 | 293 | Chr3: 20180339-20180631 | Arabidopsis thaliana |
AT3G54510:CDS:3 | 144 | Chr3: 20180697-20180840 | Arabidopsis thaliana |
AT3G54510:CDS:4 | 64 | Chr3: 20180929-20180992 | Arabidopsis thaliana |
AT3G54510:CDS:5 | 213 | Chr3: 20181074-20181286 | Arabidopsis thaliana |
AT3G54510:CDS:7 | 165 | Chr3: 20181364-20181528 | Arabidopsis thaliana |
AT3G54510:CDS:8 | 299 | Chr3: 20181602-20181900 | Arabidopsis thaliana |
AT3G54510:CDS:9 | 280 | Chr3: 20182005-20182284 | Arabidopsis thaliana |
AT3G54510:CDS:10 | 279 | Chr3: 20182383-20182661 | Arabidopsis thaliana |
AT3G54510:CDS:12 | 234 | Chr3: 20182731-20182964 | Arabidopsis thaliana |
AT3G54510:CDS:13 | 168 | Chr3: 20183053-20183220 | Arabidopsis thaliana |
AT3G54510:CDS:2 | 152 | Chr3: 20180689-20180840 | Arabidopsis thaliana |
AT3G54510:CDS:4.1 | 64 | Chr3: 20180929-20180992 | Arabidopsis thaliana |
AT3G54510:CDS:5.1 | 213 | Chr3: 20181074-20181286 | Arabidopsis thaliana |
AT3G54510:CDS:7.1 | 165 | Chr3: 20181364-20181528 | Arabidopsis thaliana |
AT3G54510:CDS:8.1 | 299 | Chr3: 20181602-20181900 | Arabidopsis thaliana |
AT3G54510:CDS:9.1 | 280 | Chr3: 20182005-20182284 | Arabidopsis thaliana |
AT3G54510:CDS:10.1 | 279 | Chr3: 20182383-20182661 | Arabidopsis thaliana |
AT3G54510:CDS:12.1 | 234 | Chr3: 20182731-20182964 | Arabidopsis thaliana |
AT3G54510:CDS:13.1 | 168 | Chr3: 20183053-20183220 | Arabidopsis thaliana |
AT3G54510:CDS:1.1 | 293 | Chr3: 20180339-20180631 | Arabidopsis thaliana |
AT3G54510:CDS:3.1 | 144 | Chr3: 20180697-20180840 | Arabidopsis thaliana |
AT3G54510:CDS:4.2 | 64 | Chr3: 20180929-20180992 | Arabidopsis thaliana |
AT3G54510:CDS:5.2 | 213 | Chr3: 20181074-20181286 | Arabidopsis thaliana |
AT3G54510:CDS:7.2 | 165 | Chr3: 20181364-20181528 | Arabidopsis thaliana |
AT3G54510:CDS:8.2 | 299 | Chr3: 20181602-20181900 | Arabidopsis thaliana |
AT3G54510:CDS:9.2 | 280 | Chr3: 20182005-20182284 | Arabidopsis thaliana |
AT3G54510:CDS:11 | 297 | Chr3: 20182383-20182679 | Arabidopsis thaliana |
AT3G54510:CDS:2.1 | 152 | Chr3: 20180689-20180840 | Arabidopsis thaliana |
AT3G54510:CDS:4.3 | 64 | Chr3: 20180929-20180992 | Arabidopsis thaliana |
AT3G54510:CDS:5.3 | 213 | Chr3: 20181074-20181286 | Arabidopsis thaliana |
Exons
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT3G54510:exon:1 | 625 | Chr3: 20180007-20180631 | Arabidopsis thaliana |
AT3G54510:exon:5 | 164 | Chr3: 20180677-20180840 | Arabidopsis thaliana |
AT3G54510:exon:16 | 457 | Chr3: 20183053-20183509 | Arabidopsis thaliana |
AT3G54510:exon:2 | 460 | Chr3: 20180172-20180631 | Arabidopsis thaliana |
AT3G54510:exon:6 | 144 | Chr3: 20180697-20180840 | Arabidopsis thaliana |
AT3G54510:exon:3 | 669 | Chr3: 20180172-20180840 | Arabidopsis thaliana |
AT3G54510:exon:18 | 536 | Chr3: 20183053-20183588 | Arabidopsis thaliana |
AT3G54510:exon:4 | 555 | Chr3: 20180286-20180840 | Arabidopsis thaliana |
AT3G54510:exon:7 | 64 | Chr3: 20180929-20180992 | Arabidopsis thaliana |
AT3G54510:exon:9 | 213 | Chr3: 20181074-20181286 | Arabidopsis thaliana |
AT3G54510:exon:14 | 582 | Chr3: 20182383-20182964 | Arabidopsis thaliana |
AT3G54510:exon:8 | 246 | Chr3: 20181041-20181286 | Arabidopsis thaliana |
AT3G54510:exon:10 | 165 | Chr3: 20181364-20181528 | Arabidopsis thaliana |
AT3G54510:exon:11 | 299 | Chr3: 20181602-20181900 | Arabidopsis thaliana |
AT3G54510:exon:12 | 280 | Chr3: 20182005-20182284 | Arabidopsis thaliana |
AT3G54510:exon:13 | 279 | Chr3: 20182383-20182661 | Arabidopsis thaliana |
AT3G54510:exon:15 | 234 | Chr3: 20182731-20182964 | Arabidopsis thaliana |
AT3G54510:exon:17 | 458 | Chr3: 20183053-20183510 | Arabidopsis thaliana |
AT3G54520:exon:5 | 418 | Chr3: 20183517-20183934 | Arabidopsis thaliana |
Five Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT3G54510:five_prime_UTR:1 | 332 | Chr3: 20180007-20180338 | Arabidopsis thaliana |
AT3G54510:five_prime_UTR:3 | 460 | Chr3: 20180172-20180631 | Arabidopsis thaliana |
AT3G54510:five_prime_UTR:6 | 12 | Chr3: 20180677-20180688 | Arabidopsis thaliana |
AT3G54510:five_prime_UTR:2 | 167 | Chr3: 20180172-20180338 | Arabidopsis thaliana |
AT3G54510:five_prime_UTR:4 | 517 | Chr3: 20180172-20180688 | Arabidopsis thaliana |
AT3G54510:five_prime_UTR:5 | 403 | Chr3: 20180286-20180688 | Arabidopsis thaliana |
AT3G54510:five_prime_UTR:7 | 69 | Chr3: 20181041-20181109 | Arabidopsis thaliana |
Genes
DB identifier | Secondary Identifier | Symbol | Name | Length | Chromosome Location |
Organism . Short Name |
TAIR Computational Description | TAIR Curator Summary | TAIR Short Description | TAIR Aliases |
---|---|---|---|---|---|---|---|---|---|---|
AT3G54520 | locus:2097001 | AT3G54520 | 1686 | Chr3: 20183517-20185202 | A. thaliana | hypothetical protein;(source:Araport11) | NULL | NULL |
mRNAs
DB identifier | Length | Chromosome Location |
---|---|---|
AT3G54510.2 | 2760 | Chr3: 20180007-20183509 |
AT3G54510.1 | 2615 | Chr3: 20180172-20183509 |
AT3G54510.3 | 2743 | Chr3: 20180172-20183588 |
AT3G54510.4 | 2739 | Chr3: 20180172-20183588 |
AT3G54510.5 | 2616 | Chr3: 20180286-20183510 |
AT3G54510.6 | 1961 | Chr3: 20181041-20183510 |
AT3G54520.1 | 1158 | Chr3: 20183517-20185202 |
Three Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT3G54510:three_prime_UTR:4 | 289 | Chr3: 20183221-20183509 | Arabidopsis thaliana |
AT3G54510:three_prime_UTR:3 | 536 | Chr3: 20183053-20183588 | Arabidopsis thaliana |
AT3G54510:three_prime_UTR:6 | 368 | Chr3: 20183221-20183588 | Arabidopsis thaliana |
AT3G54510:three_prime_UTR:1 | 285 | Chr3: 20182680-20182964 | Arabidopsis thaliana |
AT3G54510:three_prime_UTR:2 | 458 | Chr3: 20183053-20183510 | Arabidopsis thaliana |
AT3G54510:three_prime_UTR:5 | 290 | Chr3: 20183221-20183510 | Arabidopsis thaliana |
AT3G54520:three_prime_UTR:1 | 229 | Chr3: 20183517-20183745 | Arabidopsis thaliana |
Proteins
Curated comments from UniProt
Type | Comment | Proteins |
---|---|---|
CSCL8_ARATH | function | Acts as an osmosensitive calcium-permeable cation channel. |
CSCL8_ARATH B3H4A0_ARATH A0A1I9LMF9_ARATH A0A1I9LMF7_ARATH | similarity | Belongs to the CSC1 (TC 1.A.17) family. |
Function
Gene Ontology
cellular component | |
---|---|
membrane | ECO |
molecular function | |
calcium-activated cation channel activity | ECO |
biological process | |
No terms in this category. |
Interactions
Interaction Network
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Expression
Co-expression
Querying ATTED Service...
Data Source: ATTED-II |
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Top N
LS: LS is a monotonic transformation (negative logit) of MR index. Larger LS indicates stronger co-expression.
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