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Genomics
Overlapping Features
Genome features that overlap coordinates of this Gene
CDSs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT3G54440:CDS:19 | 171 | Chr3: 20148494-20148664 | Arabidopsis thaliana |
AT3G54440:CDS:17 | 672 | Chr3: 20148815-20149486 | Arabidopsis thaliana |
AT3G54440:CDS:16 | 123 | Chr3: 20149899-20150021 | Arabidopsis thaliana |
AT3G54440:CDS:15 | 300 | Chr3: 20150127-20150426 | Arabidopsis thaliana |
AT3G54440:CDS:14 | 56 | Chr3: 20150503-20150558 | Arabidopsis thaliana |
AT3G54440:CDS:13 | 136 | Chr3: 20151821-20151956 | Arabidopsis thaliana |
AT3G54440:CDS:12 | 109 | Chr3: 20152175-20152283 | Arabidopsis thaliana |
AT3G54440:CDS:11 | 160 | Chr3: 20152416-20152575 | Arabidopsis thaliana |
AT3G54440:CDS:10 | 304 | Chr3: 20152949-20153252 | Arabidopsis thaliana |
AT3G54440:CDS:9 | 207 | Chr3: 20153379-20153585 | Arabidopsis thaliana |
AT3G54440:CDS:8 | 240 | Chr3: 20154060-20154299 | Arabidopsis thaliana |
AT3G54440:CDS:7 | 66 | Chr3: 20154486-20154551 | Arabidopsis thaliana |
AT3G54440:CDS:6 | 184 | Chr3: 20154648-20154831 | Arabidopsis thaliana |
AT3G54440:CDS:5 | 79 | Chr3: 20155296-20155374 | Arabidopsis thaliana |
AT3G54440:CDS:4 | 147 | Chr3: 20155981-20156127 | Arabidopsis thaliana |
AT3G54440:CDS:3 | 240 | Chr3: 20156378-20156617 | Arabidopsis thaliana |
AT3G54440:CDS:1 | 130 | Chr3: 20156890-20157019 | Arabidopsis thaliana |
AT3G54440:CDS:19.1 | 171 | Chr3: 20148494-20148664 | Arabidopsis thaliana |
AT3G54440:CDS:17.1 | 672 | Chr3: 20148815-20149486 | Arabidopsis thaliana |
AT3G54440:CDS:16.1 | 123 | Chr3: 20149899-20150021 | Arabidopsis thaliana |
AT3G54440:CDS:15.1 | 300 | Chr3: 20150127-20150426 | Arabidopsis thaliana |
AT3G54440:CDS:14.1 | 56 | Chr3: 20150503-20150558 | Arabidopsis thaliana |
AT3G54440:CDS:13.1 | 136 | Chr3: 20151821-20151956 | Arabidopsis thaliana |
AT3G54440:CDS:12.1 | 109 | Chr3: 20152175-20152283 | Arabidopsis thaliana |
AT3G54440:CDS:11.1 | 160 | Chr3: 20152416-20152575 | Arabidopsis thaliana |
AT3G54440:CDS:10.1 | 304 | Chr3: 20152949-20153252 | Arabidopsis thaliana |
AT3G54440:CDS:9.1 | 207 | Chr3: 20153379-20153585 | Arabidopsis thaliana |
AT3G54440:CDS:8.1 | 240 | Chr3: 20154060-20154299 | Arabidopsis thaliana |
AT3G54440:CDS:7.1 | 66 | Chr3: 20154486-20154551 | Arabidopsis thaliana |
AT3G54440:CDS:6.1 | 184 | Chr3: 20154648-20154831 | Arabidopsis thaliana |
Exons
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT3G54420:exon:2 | 1639 | Chr3: 20146628-20148266 | Arabidopsis thaliana |
AT3G54430:exon:1 | 716 | Chr3: 20147506-20148221 | Arabidopsis thaliana |
AT3G54440:exon:23 | 457 | Chr3: 20148208-20148664 | Arabidopsis thaliana |
AT3G54440:exon:1 | 310 | Chr3: 20156890-20157199 | Arabidopsis thaliana |
AT3G54440:exon:22 | 373 | Chr3: 20148292-20148664 | Arabidopsis thaliana |
AT3G54440:exon:19 | 672 | Chr3: 20148815-20149486 | Arabidopsis thaliana |
AT3G54440:exon:4 | 279 | Chr3: 20156378-20156656 | Arabidopsis thaliana |
AT3G54440:exon:3 | 178 | Chr3: 20156890-20157067 | Arabidopsis thaliana |
AT3G54440:exon:21 | 329 | Chr3: 20148336-20148664 | Arabidopsis thaliana |
AT3G54440:exon:20 | 675 | Chr3: 20148812-20149486 | Arabidopsis thaliana |
AT3G54440:exon:18 | 123 | Chr3: 20149899-20150021 | Arabidopsis thaliana |
AT3G54440:exon:17 | 300 | Chr3: 20150127-20150426 | Arabidopsis thaliana |
AT3G54440:exon:16 | 56 | Chr3: 20150503-20150558 | Arabidopsis thaliana |
AT3G54440:exon:15 | 136 | Chr3: 20151821-20151956 | Arabidopsis thaliana |
AT3G54440:exon:14 | 109 | Chr3: 20152175-20152283 | Arabidopsis thaliana |
AT3G54440:exon:13 | 160 | Chr3: 20152416-20152575 | Arabidopsis thaliana |
AT3G54440:exon:12 | 304 | Chr3: 20152949-20153252 | Arabidopsis thaliana |
AT3G54440:exon:11 | 207 | Chr3: 20153379-20153585 | Arabidopsis thaliana |
AT3G54440:exon:10 | 240 | Chr3: 20154060-20154299 | Arabidopsis thaliana |
AT3G54440:exon:9 | 66 | Chr3: 20154486-20154551 | Arabidopsis thaliana |
AT3G54440:exon:8 | 184 | Chr3: 20154648-20154831 | Arabidopsis thaliana |
AT3G54440:exon:7 | 79 | Chr3: 20155296-20155374 | Arabidopsis thaliana |
AT3G54440:exon:6 | 147 | Chr3: 20155981-20156127 | Arabidopsis thaliana |
AT3G54440:exon:5 | 240 | Chr3: 20156378-20156617 | Arabidopsis thaliana |
AT3G54440:exon:2 | 249 | Chr3: 20156890-20157138 | Arabidopsis thaliana |
Five Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT3G54430:five_prime_UTR:1 | 370 | Chr3: 20147852-20148221 | Arabidopsis thaliana |
AT3G54440:five_prime_UTR:1 | 180 | Chr3: 20157020-20157199 | Arabidopsis thaliana |
AT3G54440:five_prime_UTR:3 | 48 | Chr3: 20157020-20157067 | Arabidopsis thaliana |
AT3G54440:five_prime_UTR:2 | 119 | Chr3: 20157020-20157138 | Arabidopsis thaliana |
Genes
DB identifier | Secondary Identifier | Symbol | Name | Length | Chromosome Location |
Organism . Short Name |
TAIR Computational Description | TAIR Curator Summary | TAIR Short Description | TAIR Aliases |
---|---|---|---|---|---|---|---|---|---|---|
AT3G54420 | locus:2096159 | EP3 | homolog of carrot EP3-3 chitinase | 2362 | Chr3: 20145905-20148266 | A. thaliana | homolog of carrot EP3-3 chitinase;(source:Araport11) | encodes an EP3 chitinase that is expressed during somatic embryogenesis in 'nursing' cells surrounding the embryos but not in embryos themselves. The gene is also expressed in mature pollen and growing pollen tubes until they enter the receptive synergid, but not in endosperm and integuments as in carrot. Post-embryonically, expression is found in hydathodes, stipules, root epidermis and emerging root hairs. | homolog of carrot EP3-3 chitinase | ATCHITIV, ATEP3, CHIV, EP3 |
AT3G54430 | locus:2096169 | SRS6 | SHI-related sequence 6 | 1596 | Chr3: 20146626-20148221 | A. thaliana | SHI-related sequence 6;(source:Araport11) | A member of SHI gene family. Arabidopsis thaliana has ten members that encode proteins with a RING finger-like zinc finger motif. Despite being highly divergent in sequence, many of the SHI-related genes are partially redundant in function and synergistically promote gynoecium, stamen and leaf development in Arabidopsis. | SHI-related sequence 6 | SRS6 |
mRNAs
DB identifier | Length | Chromosome Location |
---|---|---|
AT3G54420.1 | 2084 | Chr3: 20145905-20148266 |
AT3G54430.1 | 1520 | Chr3: 20146626-20148221 |
AT3G54440.1 | 3790 | Chr3: 20148208-20157199 |
AT3G54440.3 | 3613 | Chr3: 20148292-20157067 |
AT3G54440.2 | 3604 | Chr3: 20148336-20157138 |
Three Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT3G54420:three_prime_UTR:1 | 1232 | Chr3: 20147035-20148266 | Arabidopsis thaliana |
AT3G54440:three_prime_UTR:3 | 286 | Chr3: 20148208-20148493 | Arabidopsis thaliana |
AT3G54440:three_prime_UTR:2 | 202 | Chr3: 20148292-20148493 | Arabidopsis thaliana |
AT3G54440:three_prime_UTR:1 | 158 | Chr3: 20148336-20148493 | Arabidopsis thaliana |
Proteins
Curated comments from UniProt
Type | Comment | Proteins |
---|---|---|
F4JCX0_ARATH A0A384L9U1_ARATH A0A5S9XL18_ARATH | similarity | Belongs to the glycosyl hydrolase 2 family. |
Function
Gene Ontology
cellular component | |
---|---|
beta-galactosidase complex | ECO |
molecular function | |
beta-galactosidase activity | ECO |
carbohydrate binding | ECO |
biological process | |
carbohydrate metabolic process | ECO |
catabolic process | ECO |
Interactions
Interaction Network
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Expression
Co-expression
Querying ATTED Service...
Data Source: ATTED-II |
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Top N
LS: LS is a monotonic transformation (negative logit) of MR index. Larger LS indicates stronger co-expression.
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