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Gene : RIP3 A. thaliana
DB identifier  ? AT3G53350 Secondary Identifier  ? locus:2083951
Name  ? ROP interactive partner 3 Brief Description  ROP interactive partner 4
TAIR Computational Description  ROP interactive partner 4;(source:Araport11)
TAIR Curator Summary  Encodes RIP3 (ROP interactive partner 3), a microtubule-binding protein that is anchored to the plasma membrane domains and promotes local microtubule disassembly, forming as specific pattern of secondary walls in xylem vessel cells. Localized at microtubules and interacts with the plant-specific kinesin AtKinesin-13A. Together with ICR2 involved in secondary wall patterning in the xylem and root hair polar growth.
TAIR Short Description  ROP interactive partner 4
TAIR Aliases  ICR5, MIDD1, RIP3, RIP4
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2 Gene Rifs

1 Organism

13 Publications

0 Synonyms

Genomics

Genome feature

Region: gene ? Length: 2773  
Location: Chr3:19779978-19782750 reverse strand

Gene models - RIP3 AT3G53350

? Gene models

Transcripts: 9  Exons: 29  Introns: 20 

Overlapping Features

? Genome features that overlap coordinates of this Gene

CDSs: 23, Exons: 15, Five Prime UTRs: 9, mRNAs: 9, Three Prime UTRs: 5
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24 Child Features

1 Cross References

1 Downstream Intergenic Region

0 Located Features

1 Upstream Intergenic Region

Proteins

Show proteins
Curated comments from UniProt

Type Comment Proteins
ICR5_ARATH ICR5_ARATH-2 function ROP effector binding specifically activated ROPs and linking them to the microtubule cytoskeleton. Involved in ROP-regulated polar growth. Involved in local disassembly of cortical microtubules when associated with ARAC10 and KIN13A and conversely mediates also the elimination of ARAC10 from the plasma membrane by the cortical microtubules. Accumulates at the plus end of shrinking microtubules. Targets KIN13A to microtubules.
A0A1I9LNX3_ARATH ICR5_ARATH ICR5_ARATH-2 A0A1I9LNW9_ARATH A0A1I9LNX4_ARATH similarity Belongs to the ICR family.
ICR5_ARATH ICR5_ARATH-2 subcellular location In xylem cells, preferentially colocalizes with cortical microtubules located beneath the secondary wall pits (PubMed:20619818). May be associated to the plasma membrane through the interaction with ARAC10 (PubMed:22984069).
ICR5_ARATH ICR5_ARATH-2 tissue specificity Expressed in xylem cells in the roots and in stamens, petals and pollen.

5 Proteins

Function

Gene Ontology

cellular component
plasma membrane  ? ECO  
nucleus  ? ECO  
microtubule  ? ECO  
cytoplasm  ? ECO  
molecular function
No terms in this category.
biological process
plant-type cell wall organization  ? ECO  
cortical microtubule organization  ? ECO  

Interactions

Interaction Network

Expression

eFP Visualization

Data Source: BAR




Co-expression

Querying ATTED Service...
Data Source: ATTED-II
Top N
LS: LS is a monotonic transformation (negative logit) of MR index. Larger LS indicates stronger co-expression.

 

Homology

Phytozome Homologs

Data Source: Phytozome


0 Homologues

 

Other

9 Data Sets






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