External Links
- Aracyc
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- Plant Proteome Database
- SUBA
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- GeneVisible
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- TAIR
- EnsemblPlants
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- ATTED-II
- T-DNA Express
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Genomics
Overlapping Features
Genome features that overlap coordinates of this Gene
CDSs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT3G53090:CDS:1 | 24 | Chr3: 19679273-19679296 | Arabidopsis thaliana |
AT3G53090:CDS:2 | 123 | Chr3: 19679744-19679866 | Arabidopsis thaliana |
AT3G53090:CDS:3 | 241 | Chr3: 19679997-19680237 | Arabidopsis thaliana |
AT3G53090:CDS:4 | 563 | Chr3: 19680326-19680888 | Arabidopsis thaliana |
AT3G53090:CDS:5 | 960 | Chr3: 19681063-19682022 | Arabidopsis thaliana |
AT3G53090:CDS:6 | 323 | Chr3: 19682100-19682422 | Arabidopsis thaliana |
AT3G53090:CDS:7 | 279 | Chr3: 19682538-19682816 | Arabidopsis thaliana |
AT3G53090:CDS:8 | 253 | Chr3: 19682929-19683181 | Arabidopsis thaliana |
AT3G53090:CDS:9 | 171 | Chr3: 19683291-19683461 | Arabidopsis thaliana |
AT3G53090:CDS:10 | 93 | Chr3: 19683577-19683669 | Arabidopsis thaliana |
AT3G53090:CDS:11 | 108 | Chr3: 19683748-19683855 | Arabidopsis thaliana |
AT3G53090:CDS:12 | 117 | Chr3: 19683980-19684096 | Arabidopsis thaliana |
AT3G53090:CDS:13 | 90 | Chr3: 19684189-19684278 | Arabidopsis thaliana |
AT3G53090:CDS:14 | 84 | Chr3: 19684370-19684453 | Arabidopsis thaliana |
AT3G53090:CDS:1.1 | 24 | Chr3: 19679273-19679296 | Arabidopsis thaliana |
AT3G53090:CDS:2.1 | 123 | Chr3: 19679744-19679866 | Arabidopsis thaliana |
AT3G53090:CDS:3.1 | 241 | Chr3: 19679997-19680237 | Arabidopsis thaliana |
AT3G53090:CDS:4.1 | 563 | Chr3: 19680326-19680888 | Arabidopsis thaliana |
AT3G53090:CDS:5.1 | 960 | Chr3: 19681063-19682022 | Arabidopsis thaliana |
AT3G53090:CDS:6.1 | 323 | Chr3: 19682100-19682422 | Arabidopsis thaliana |
AT3G53090:CDS:7.1 | 279 | Chr3: 19682538-19682816 | Arabidopsis thaliana |
AT3G53090:CDS:8.1 | 253 | Chr3: 19682929-19683181 | Arabidopsis thaliana |
AT3G53090:CDS:9.1 | 171 | Chr3: 19683291-19683461 | Arabidopsis thaliana |
AT3G53090:CDS:10.1 | 93 | Chr3: 19683577-19683669 | Arabidopsis thaliana |
AT3G53090:CDS:11.1 | 108 | Chr3: 19683748-19683855 | Arabidopsis thaliana |
AT3G53090:CDS:12.1 | 117 | Chr3: 19683980-19684096 | Arabidopsis thaliana |
AT3G53090:CDS:13.1 | 90 | Chr3: 19684189-19684278 | Arabidopsis thaliana |
AT3G53090:CDS:14.1 | 84 | Chr3: 19684370-19684453 | Arabidopsis thaliana |
AT3G53100:CDS:5 | 194 | Chr3: 19684989-19685182 | Arabidopsis thaliana |
AT3G53100:CDS:4 | 256 | Chr3: 19685335-19685590 | Arabidopsis thaliana |
Exons
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT3G53090:exon:1 | 120 | Chr3: 19679177-19679296 | Arabidopsis thaliana |
AT3G53090:exon:16 | 290 | Chr3: 19684370-19684659 | Arabidopsis thaliana |
AT3G53090:exon:2 | 117 | Chr3: 19679180-19679296 | Arabidopsis thaliana |
AT3G53090:exon:3 | 123 | Chr3: 19679744-19679866 | Arabidopsis thaliana |
AT3G53090:exon:4 | 241 | Chr3: 19679997-19680237 | Arabidopsis thaliana |
AT3G53090:exon:5 | 563 | Chr3: 19680326-19680888 | Arabidopsis thaliana |
AT3G53090:exon:6 | 960 | Chr3: 19681063-19682022 | Arabidopsis thaliana |
AT3G53090:exon:7 | 323 | Chr3: 19682100-19682422 | Arabidopsis thaliana |
AT3G53090:exon:8 | 279 | Chr3: 19682538-19682816 | Arabidopsis thaliana |
AT3G53090:exon:9 | 253 | Chr3: 19682929-19683181 | Arabidopsis thaliana |
AT3G53090:exon:10 | 171 | Chr3: 19683291-19683461 | Arabidopsis thaliana |
AT3G53090:exon:11 | 93 | Chr3: 19683577-19683669 | Arabidopsis thaliana |
AT3G53090:exon:12 | 108 | Chr3: 19683748-19683855 | Arabidopsis thaliana |
AT3G53090:exon:13 | 117 | Chr3: 19683980-19684096 | Arabidopsis thaliana |
AT3G53090:exon:14 | 90 | Chr3: 19684189-19684278 | Arabidopsis thaliana |
AT3G53090:exon:15 | 98 | Chr3: 19684370-19684467 | Arabidopsis thaliana |
AT3G53090:exon:17 | 43 | Chr3: 19685318-19685360 | Arabidopsis thaliana |
AT3G53100:exon:5 | 497 | Chr3: 19684686-19685182 | Arabidopsis thaliana |
AT3G53100:exon:4 | 256 | Chr3: 19685335-19685590 | Arabidopsis thaliana |
Five Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT3G53090:five_prime_UTR:1 | 96 | Chr3: 19679177-19679272 | Arabidopsis thaliana |
AT3G53090:five_prime_UTR:2 | 93 | Chr3: 19679180-19679272 | Arabidopsis thaliana |
Genes
DB identifier | Secondary Identifier | Symbol | Name | Length | Chromosome Location |
Organism . Short Name |
TAIR Computational Description | TAIR Curator Summary | TAIR Short Description | TAIR Aliases |
---|---|---|---|---|---|---|---|---|---|---|
AT3G53100 | locus:2101978 | AT3G53100 | 2299 | Chr3: 19684686-19686984 | A. thaliana | GDSL-like Lipase/Acylhydrolase superfamily protein;(source:Araport11) | GDSL-motif esterase/acyltransferase/lipase. Enzyme group with broad substrate specificity that may catalyze acyltransfer or hydrolase reactions with lipid and non-lipid substrates. | GDSL-like Lipase/Acylhydrolase superfamily protein |
mRNAs
DB identifier | Length | Chromosome Location |
---|---|---|
AT3G53090.1 | 3731 | Chr3: 19679177-19684659 |
AT3G53090.2 | 3579 | Chr3: 19679180-19685360 |
AT3G53100.1 | 1801 | Chr3: 19684686-19686984 |
Three Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT3G53090:three_prime_UTR:2 | 206 | Chr3: 19684454-19684659 | Arabidopsis thaliana |
AT3G53090:three_prime_UTR:1 | 14 | Chr3: 19684454-19684467 | Arabidopsis thaliana |
AT3G53090:three_prime_UTR:3 | 43 | Chr3: 19685318-19685360 | Arabidopsis thaliana |
AT3G53100:three_prime_UTR:1 | 303 | Chr3: 19684686-19684988 | Arabidopsis thaliana |
Proteins
Curated comments from UniProt
Type | Comment | Proteins |
---|---|---|
UPL7_ARATH | function | Probable E3 ubiquitin-protein ligase which mediates ubiquitination and subsequent proteasomal degradation of target proteins. |
UPL7_ARATH | pathway | Protein modification; protein ubiquitination. |
UPL7_ARATH | similarity | Belongs to the UPL family. |
Function
Gene Ontology
cellular component | |
---|---|
No terms in this category. | |
molecular function | |
ubiquitin protein ligase activity | ECO |
biological process | |
protein polyubiquitination | ECO |
Interactions
Interaction Network
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Expression
Co-expression
Querying ATTED Service...
Data Source: ATTED-II |
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Top N
LS: LS is a monotonic transformation (negative logit) of MR index. Larger LS indicates stronger co-expression.
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