External Links
- Aracyc
- AceView
- Plant Proteome Database
- SUBA
- Gramene
- GeneVisible
- ABRC
- TAIR
- EnsemblPlants
- PGDD
- AtcisDB
- Plaza
- pep2pro
- NCBI-Entrez
- PIR
- AtGDB
- Agrisera Antibodies
- ATTED-II
- T-DNA Express
- AtGenExpress
- AthaMap
- Phytozome
Genomics
Overlapping Features
Genome features that overlap coordinates of this Gene
CDSs: 7, Exons: 8, Five Prime UTR: 1, Gene: 1, mRNAs: 4, Three Prime UTRs: 3, Transposable Elements: 10, Transposable Element Gene: 1, Transposon Fragments: 10
CDSs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT3G52700:CDS:5 | 22 | Chr3: 19532610-19532631 | Arabidopsis thaliana |
AT3G52700:CDS:4 | 386 | Chr3: 19532708-19533093 | Arabidopsis thaliana |
AT3G52700:CDS:6 | 151 | Chr3: 19532416-19532566 | Arabidopsis thaliana |
AT3G52700:CDS:3 | 409 | Chr3: 19532708-19533116 | Arabidopsis thaliana |
AT3G52700:CDS:2 | 29 | Chr3: 19533179-19533207 | Arabidopsis thaliana |
AT3G52700:CDS:1 | 62 | Chr3: 19538342-19538403 | Arabidopsis thaliana |
AT3G52710:CDS:1 | 870 | Chr3: 19534638-19535507 | Arabidopsis thaliana |
Exons
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT3G52700:exon:6 | 437 | Chr3: 19532195-19532631 | Arabidopsis thaliana |
AT3G52700:exon:4 | 386 | Chr3: 19532708-19533093 | Arabidopsis thaliana |
AT3G52700:exon:5 | 371 | Chr3: 19532196-19532566 | Arabidopsis thaliana |
AT3G52700:exon:3 | 409 | Chr3: 19532708-19533116 | Arabidopsis thaliana |
AT3G52700:exon:2 | 29 | Chr3: 19533179-19533207 | Arabidopsis thaliana |
AT3G52700:exon:1 | 62 | Chr3: 19538342-19538403 | Arabidopsis thaliana |
AT3G52705:exon:1 | 319 | Chr3: 19533920-19534238 | Arabidopsis thaliana |
AT3G52710:exon:1 | 1434 | Chr3: 19534585-19536018 | Arabidopsis thaliana |
Five Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT3G52710:five_prime_UTR:1 | 53 | Chr3: 19534585-19534637 | Arabidopsis thaliana |
Genes
DB identifier | Secondary Identifier | Symbol | Name | Length | Chromosome Location |
Organism . Short Name |
TAIR Computational Description | TAIR Curator Summary | TAIR Short Description | TAIR Aliases |
---|---|---|---|---|---|---|---|---|---|---|
AT3G52710 | locus:2083203 | AT3G52710 | 1434 | Chr3: 19534585-19536018 | A. thaliana | hypothetical protein;(source:Araport11) | NULL | NULL |
mRNAs
DB identifier | Length | Chromosome Location |
---|---|---|
AT3G52700.2 | 823 | Chr3: 19532195-19533093 |
AT3G52700.1 | 871 | Chr3: 19532196-19538403 |
AT3G52705.1 | 319 | Chr3: 19533920-19534238 |
AT3G52710.1 | 1434 | Chr3: 19534585-19536018 |
Three Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT3G52700:three_prime_UTR:2 | 415 | Chr3: 19532195-19532609 | Arabidopsis thaliana |
AT3G52700:three_prime_UTR:1 | 220 | Chr3: 19532196-19532415 | Arabidopsis thaliana |
AT3G52710:three_prime_UTR:1 | 511 | Chr3: 19535508-19536018 | Arabidopsis thaliana |
Transposable Elements
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT3TE79285 | 104 | Chr3: 19533126-19533229 | Arabidopsis thaliana |
AT3TE79290 | 642 | Chr3: 19533230-19533871 | Arabidopsis thaliana |
AT3TE79295 | 53 | Chr3: 19533872-19533924 | Arabidopsis thaliana |
AT3TE79300 | 310 | Chr3: 19533925-19534234 | Arabidopsis thaliana |
AT3TE79305 | 30 | Chr3: 19534235-19534264 | Arabidopsis thaliana |
AT3TE79310 | 61 | Chr3: 19536271-19536331 | Arabidopsis thaliana |
AT3TE79315 | 125 | Chr3: 19536332-19536456 | Arabidopsis thaliana |
AT3TE79320 | 1502 | Chr3: 19536457-19537958 | Arabidopsis thaliana |
AT3TE79325 | 389 | Chr3: 19537959-19538347 | Arabidopsis thaliana |
AT3TE79330 | 77 | Chr3: 19538348-19538424 | Arabidopsis thaliana |
Transposable Element Genes
DB identifier | Secondary Identifier | Symbol | Name | Length | Chromosome Location |
Organism . Short Name |
TAIR Computational Description | TAIR Curator Summary | TAIR Short Description | TAIR Aliases |
---|---|---|---|---|---|---|---|---|---|---|
AT3G52705 | locus:1006230207 | AT3G52705 | 319 | Chr3: 19533920-19534238 | A. thaliana | transposable_element_gene;(source:Araport11);copia-like retrotransposon family, has a 7.3e-24 P-value blast match to reverse transcriptase (Ty1_Copia-element) (Arabidopsis thaliana);(source:TAIR10) | NULL | transposable element gene |
Transposon Fragments
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT3TE79285:transposon_fragment:1 | 104 | Chr3: 19533126-19533229 | Arabidopsis thaliana |
AT3TE79290:transposon_fragment:1 | 642 | Chr3: 19533230-19533871 | Arabidopsis thaliana |
AT3TE79295:transposon_fragment:1 | 53 | Chr3: 19533872-19533924 | Arabidopsis thaliana |
AT3TE79300:transposon_fragment:1 | 310 | Chr3: 19533925-19534234 | Arabidopsis thaliana |
AT3TE79305:transposon_fragment:1 | 30 | Chr3: 19534235-19534264 | Arabidopsis thaliana |
AT3TE79310:transposon_fragment:1 | 61 | Chr3: 19536271-19536331 | Arabidopsis thaliana |
AT3TE79315:transposon_fragment:1 | 125 | Chr3: 19536332-19536456 | Arabidopsis thaliana |
AT3TE79320:transposon_fragment:1 | 1502 | Chr3: 19536457-19537958 | Arabidopsis thaliana |
AT3TE79325:transposon_fragment:1 | 389 | Chr3: 19537959-19538347 | Arabidopsis thaliana |
AT3TE79330:transposon_fragment:1 | 77 | Chr3: 19538348-19538424 | Arabidopsis thaliana |
Function
Gene Ontology
cellular component | |
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No terms in this category. | |
molecular function | |
No terms in this category. | |
biological process | |
No terms in this category. |
Interactions
Interaction Network
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Expression
Co-expression
Querying ATTED Service...
Data Source: ATTED-II |
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Top N
LS: LS is a monotonic transformation (negative logit) of MR index. Larger LS indicates stronger co-expression.
Waiting for results...