External Links
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Genomics
Overlapping Features
Genome features that overlap coordinates of this Gene
CDSs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT3G52390:CDS:14 | 70 | Chr3: 19423105-19423174 | Arabidopsis thaliana |
AT3G52390:CDS:13 | 84 | Chr3: 19423277-19423360 | Arabidopsis thaliana |
AT3G52390:CDS:12 | 217 | Chr3: 19423450-19423666 | Arabidopsis thaliana |
AT3G52390:CDS:11 | 83 | Chr3: 19423809-19423891 | Arabidopsis thaliana |
AT3G52390:CDS:10 | 111 | Chr3: 19423985-19424095 | Arabidopsis thaliana |
AT3G52390:CDS:9 | 71 | Chr3: 19424179-19424249 | Arabidopsis thaliana |
AT3G52390:CDS:8 | 81 | Chr3: 19424361-19424441 | Arabidopsis thaliana |
AT3G52390:CDS:7 | 44 | Chr3: 19424545-19424588 | Arabidopsis thaliana |
AT3G52390:CDS:6 | 58 | Chr3: 19424668-19424725 | Arabidopsis thaliana |
AT3G52390:CDS:5 | 101 | Chr3: 19424813-19424913 | Arabidopsis thaliana |
AT3G52390:CDS:3 | 26 | Chr3: 19425011-19425036 | Arabidopsis thaliana |
AT3G52390:CDS:2 | 26 | Chr3: 19425158-19425183 | Arabidopsis thaliana |
AT3G52390:CDS:14.1 | 70 | Chr3: 19423105-19423174 | Arabidopsis thaliana |
AT3G52390:CDS:13.1 | 84 | Chr3: 19423277-19423360 | Arabidopsis thaliana |
AT3G52390:CDS:12.1 | 217 | Chr3: 19423450-19423666 | Arabidopsis thaliana |
AT3G52390:CDS:11.1 | 83 | Chr3: 19423809-19423891 | Arabidopsis thaliana |
AT3G52390:CDS:10.1 | 111 | Chr3: 19423985-19424095 | Arabidopsis thaliana |
AT3G52390:CDS:9.1 | 71 | Chr3: 19424179-19424249 | Arabidopsis thaliana |
AT3G52390:CDS:8.1 | 81 | Chr3: 19424361-19424441 | Arabidopsis thaliana |
AT3G52390:CDS:7.1 | 44 | Chr3: 19424545-19424588 | Arabidopsis thaliana |
AT3G52390:CDS:6.1 | 58 | Chr3: 19424668-19424725 | Arabidopsis thaliana |
AT3G52390:CDS:5.1 | 101 | Chr3: 19424813-19424913 | Arabidopsis thaliana |
AT3G52390:CDS:4 | 21 | Chr3: 19425011-19425031 | Arabidopsis thaliana |
AT3G52390:CDS:1 | 22 | Chr3: 19425162-19425183 | Arabidopsis thaliana |
Exons
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT3G52380:exon:4 | 383 | Chr3: 19422715-19423097 | Arabidopsis thaliana |
AT3G52390:exon:3 | 26 | Chr3: 19425011-19425036 | Arabidopsis thaliana |
AT3G52390:exon:2 | 26 | Chr3: 19425158-19425183 | Arabidopsis thaliana |
AT3G52390:exon:14 | 187 | Chr3: 19422988-19423174 | Arabidopsis thaliana |
AT3G52390:exon:13 | 84 | Chr3: 19423277-19423360 | Arabidopsis thaliana |
AT3G52390:exon:12 | 217 | Chr3: 19423450-19423666 | Arabidopsis thaliana |
AT3G52390:exon:11 | 83 | Chr3: 19423809-19423891 | Arabidopsis thaliana |
AT3G52390:exon:10 | 111 | Chr3: 19423985-19424095 | Arabidopsis thaliana |
AT3G52390:exon:9 | 71 | Chr3: 19424179-19424249 | Arabidopsis thaliana |
AT3G52390:exon:8 | 81 | Chr3: 19424361-19424441 | Arabidopsis thaliana |
AT3G52390:exon:7 | 44 | Chr3: 19424545-19424588 | Arabidopsis thaliana |
AT3G52390:exon:6 | 58 | Chr3: 19424668-19424725 | Arabidopsis thaliana |
AT3G52390:exon:5 | 101 | Chr3: 19424813-19424913 | Arabidopsis thaliana |
AT3G52390:exon:4 | 21 | Chr3: 19425011-19425031 | Arabidopsis thaliana |
AT3G52390:exon:1 | 96 | Chr3: 19425162-19425257 | Arabidopsis thaliana |
Five Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT3G52390:five_prime_UTR:1 | 74 | Chr3: 19425184-19425257 | Arabidopsis thaliana |
Genes
DB identifier | Secondary Identifier | Symbol | Name | Length | Chromosome Location |
Organism . Short Name |
TAIR Computational Description | TAIR Curator Summary | TAIR Short Description | TAIR Aliases |
---|---|---|---|---|---|---|---|---|---|---|
AT3G52380 | locus:2079874 | CP33 | chloroplast RNA-binding protein 33 | 1701 | Chr3: 19421397-19423097 | A. thaliana | chloroplast RNA-binding protein 33;(source:Araport11) | Encodes a chloroplast RNA-binding protein that stabilizes chloroplast RNAs as evidenced by analyses of transcript accumulation in null mutants. Essential for seedling development (albino, strongly retarded growth even on sucrose-containing medium). | chloroplast RNA-binding protein 33 | CP33A, PDE322 |
mRNAs
DB identifier | Length | Chromosome Location |
---|---|---|
AT3G52380.1 | 1454 | Chr3: 19421397-19423097 |
AT3G52390.2 | 1089 | Chr3: 19422988-19425183 |
AT3G52390.1 | 1154 | Chr3: 19422988-19425257 |
Three Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT3G52380:three_prime_UTR:1 | 242 | Chr3: 19422856-19423097 | Arabidopsis thaliana |
AT3G52390:three_prime_UTR:1 | 117 | Chr3: 19422988-19423104 | Arabidopsis thaliana |
Proteins
Curated comments from UniProt
Type | Comment | Proteins |
---|---|---|
Q84TD7_ARATH A0A654FF54_ARATH | similarity | Belongs to the metallo-dependent hydrolases superfamily. TatD-type hydrolase family. |
Function
Gene Ontology
cellular component | |
---|---|
No terms in this category. | |
molecular function | |
nuclease activity | ECO |
metal ion binding | ECO |
biological process | |
No terms in this category. |
Interactions
Interaction Network
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Expression
Co-expression
Querying ATTED Service...
Data Source: ATTED-II |
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Top N
LS: LS is a monotonic transformation (negative logit) of MR index. Larger LS indicates stronger co-expression.
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