External Links
- Aracyc
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- Plant Proteome Database
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- GeneVisible
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- TAIR
- EnsemblPlants
- PGDD
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- Agrisera Antibodies
- ATTED-II
- T-DNA Express
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Genomics
Overlapping Features
Genome features that overlap coordinates of this Gene
Antisense lncRNA: 1, CDSs: 24, Exons: 13, Five Prime UTRs: 2, Genes: 2, mRNAs: 5, Three Prime UTRs: 3
CDSs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT3G52110:CDS:9 | 126 | Chr3: 19323925-19324050 | Arabidopsis thaliana |
AT3G52110:CDS:7 | 166 | Chr3: 19324195-19324360 | Arabidopsis thaliana |
AT3G52110:CDS:4 | 456 | Chr3: 19324630-19325085 | Arabidopsis thaliana |
AT3G52110:CDS:3 | 50 | Chr3: 19325180-19325229 | Arabidopsis thaliana |
AT3G52110:CDS:2 | 56 | Chr3: 19325347-19325402 | Arabidopsis thaliana |
AT3G52110:CDS:1 | 151 | Chr3: 19325482-19325632 | Arabidopsis thaliana |
AT3G52110:CDS:9.1 | 126 | Chr3: 19323925-19324050 | Arabidopsis thaliana |
AT3G52110:CDS:7.1 | 166 | Chr3: 19324195-19324360 | Arabidopsis thaliana |
AT3G52110:CDS:5 | 84 | Chr3: 19324459-19324542 | Arabidopsis thaliana |
AT3G52110:CDS:4.1 | 456 | Chr3: 19324630-19325085 | Arabidopsis thaliana |
AT3G52110:CDS:3.1 | 50 | Chr3: 19325180-19325229 | Arabidopsis thaliana |
AT3G52110:CDS:2.1 | 56 | Chr3: 19325347-19325402 | Arabidopsis thaliana |
AT3G52110:CDS:1.1 | 151 | Chr3: 19325482-19325632 | Arabidopsis thaliana |
AT3G52110:CDS:8 | 199 | Chr3: 19324162-19324360 | Arabidopsis thaliana |
AT3G52110:CDS:5.1 | 84 | Chr3: 19324459-19324542 | Arabidopsis thaliana |
AT3G52110:CDS:4.2 | 456 | Chr3: 19324630-19325085 | Arabidopsis thaliana |
AT3G52110:CDS:3.2 | 50 | Chr3: 19325180-19325229 | Arabidopsis thaliana |
AT3G52110:CDS:2.2 | 56 | Chr3: 19325347-19325402 | Arabidopsis thaliana |
AT3G52110:CDS:1.2 | 151 | Chr3: 19325482-19325632 | Arabidopsis thaliana |
AT3G52110:CDS:6 | 88 | Chr3: 19324455-19324542 | Arabidopsis thaliana |
AT3G52110:CDS:4.3 | 456 | Chr3: 19324630-19325085 | Arabidopsis thaliana |
AT3G52110:CDS:3.3 | 50 | Chr3: 19325180-19325229 | Arabidopsis thaliana |
AT3G52110:CDS:2.3 | 56 | Chr3: 19325347-19325402 | Arabidopsis thaliana |
AT3G52110:CDS:1.3 | 151 | Chr3: 19325482-19325632 | Arabidopsis thaliana |
Exons
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT3G52105:exon:3 | 496 | Chr3: 19323332-19323827 | Arabidopsis thaliana |
AT3G52110:exon:11 | 301 | Chr3: 19323750-19324050 | Arabidopsis thaliana |
AT3G52110:exon:10 | 279 | Chr3: 19323772-19324050 | Arabidopsis thaliana |
AT3G52110:exon:8 | 166 | Chr3: 19324195-19324360 | Arabidopsis thaliana |
AT3G52110:exon:9 | 199 | Chr3: 19324162-19324360 | Arabidopsis thaliana |
AT3G52110:exon:6 | 84 | Chr3: 19324459-19324542 | Arabidopsis thaliana |
AT3G52110:exon:2 | 232 | Chr3: 19325482-19325713 | Arabidopsis thaliana |
AT3G52110:exon:7 | 88 | Chr3: 19324455-19324542 | Arabidopsis thaliana |
AT3G52110:exon:5 | 456 | Chr3: 19324630-19325085 | Arabidopsis thaliana |
AT3G52110:exon:4 | 50 | Chr3: 19325180-19325229 | Arabidopsis thaliana |
AT3G52110:exon:3 | 56 | Chr3: 19325347-19325402 | Arabidopsis thaliana |
AT3G52110:exon:1 | 414 | Chr3: 19325482-19325895 | Arabidopsis thaliana |
AT3G08235:exon:1 | 208 | Chr3: 19324711-19324918 | Arabidopsis thaliana |
Five Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT3G52110:five_prime_UTR:2 | 81 | Chr3: 19325633-19325713 | Arabidopsis thaliana |
AT3G52110:five_prime_UTR:1 | 263 | Chr3: 19325633-19325895 | Arabidopsis thaliana |
Genes
DB identifier | Secondary Identifier | Symbol | Name | Length | Chromosome Location |
Organism . Short Name |
TAIR Computational Description | TAIR Curator Summary | TAIR Short Description | TAIR Aliases |
---|---|---|---|---|---|---|---|---|---|---|
AT3G52105 | locus:1006230209 | AT3G52105 | 670 | Chr3: 19323158-19323827 | A. thaliana | DIS3-exonuclease-like protein;(source:Araport11) | NULL | NULL | ||
AT3G08235 | AT3G08235 | 208 | Chr3: 19324711-19324918 | A. thaliana | Natural antisense transcript overlaps with AT3G52110;(source:Araport11) | NULL |
mRNAs
DB identifier | Length | Chromosome Location |
---|---|---|
AT3G52105.1 | 496 | Chr3: 19323332-19323827 |
AT3G52110.2 | 1261 | Chr3: 19323750-19325713 |
AT3G52110.1 | 1505 | Chr3: 19323772-19325895 |
AT3G52110.3 | 1077 | Chr3: 19324162-19325713 |
AT3G52110.4 | 1064 | Chr3: 19324455-19325895 |
Three Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT3G52105:three_prime_UTR:1 | 221 | Chr3: 19323607-19323827 | Arabidopsis thaliana |
AT3G52110:three_prime_UTR:2 | 175 | Chr3: 19323750-19323924 | Arabidopsis thaliana |
AT3G52110:three_prime_UTR:1 | 153 | Chr3: 19323772-19323924 | Arabidopsis thaliana |
Function
Gene Ontology
cellular component | |
---|---|
No terms in this category. | |
molecular function | |
No terms in this category. | |
biological process | |
No terms in this category. |
Interactions
Interaction Network
Show the following interaction types:
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Expression
Co-expression
Querying ATTED Service...
Data Source: ATTED-II |
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Top N
LS: LS is a monotonic transformation (negative logit) of MR index. Larger LS indicates stronger co-expression.
Waiting for results...