External Links
- Aracyc
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- Plant Proteome Database
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- ATTED-II
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Genomics
Overlapping Features
Genome features that overlap coordinates of this Gene
CDSs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT3G51290:CDS:1 | 727 | Chr3: 19039980-19040706 | Arabidopsis thaliana |
AT3G51290:CDS:2 | 197 | Chr3: 19040779-19040975 | Arabidopsis thaliana |
AT3G51290:CDS:3 | 224 | Chr3: 19041350-19041573 | Arabidopsis thaliana |
AT3G51290:CDS:5 | 775 | Chr3: 19041663-19042437 | Arabidopsis thaliana |
AT3G51290:CDS:1.1 | 727 | Chr3: 19039980-19040706 | Arabidopsis thaliana |
AT3G51290:CDS:2.1 | 197 | Chr3: 19040779-19040975 | Arabidopsis thaliana |
AT3G51290:CDS:3.1 | 224 | Chr3: 19041350-19041573 | Arabidopsis thaliana |
AT3G51290:CDS:4 | 754 | Chr3: 19041663-19042416 | Arabidopsis thaliana |
AT3G51290:CDS:7 | 88 | Chr3: 19043386-19043473 | Arabidopsis thaliana |
AT3G51290:CDS:8 | 110 | Chr3: 19043565-19043674 | Arabidopsis thaliana |
AT3G51290:CDS:9 | 64 | Chr3: 19043758-19043821 | Arabidopsis thaliana |
AT3G51290:CDS:10 | 131 | Chr3: 19043902-19044032 | Arabidopsis thaliana |
AT3G51290:CDS:11 | 102 | Chr3: 19044114-19044215 | Arabidopsis thaliana |
AT3G51290:CDS:1.2 | 727 | Chr3: 19039980-19040706 | Arabidopsis thaliana |
AT3G51290:CDS:2.2 | 197 | Chr3: 19040779-19040975 | Arabidopsis thaliana |
AT3G51290:CDS:3.2 | 224 | Chr3: 19041350-19041573 | Arabidopsis thaliana |
AT3G51290:CDS:6 | 757 | Chr3: 19041681-19042437 | Arabidopsis thaliana |
AT3G51300:CDS:1 | 99 | Chr3: 19043197-19043295 | Arabidopsis thaliana |
AT3G51300:CDS:2 | 88 | Chr3: 19043386-19043473 | Arabidopsis thaliana |
AT3G51300:CDS:3 | 110 | Chr3: 19043565-19043674 | Arabidopsis thaliana |
AT3G51300:CDS:4 | 64 | Chr3: 19043758-19043821 | Arabidopsis thaliana |
AT3G51300:CDS:5 | 131 | Chr3: 19043902-19044032 | Arabidopsis thaliana |
AT3G51300:CDS:6 | 102 | Chr3: 19044114-19044215 | Arabidopsis thaliana |
Exons
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT3G51290:exon:6 | 976 | Chr3: 19041663-19042638 | Arabidopsis thaliana |
AT3G51290:exon:1 | 1195 | Chr3: 19039512-19040706 | Arabidopsis thaliana |
AT3G51290:exon:5 | 754 | Chr3: 19041663-19042416 | Arabidopsis thaliana |
AT3G51290:exon:8 | 88 | Chr3: 19043386-19043473 | Arabidopsis thaliana |
AT3G51290:exon:9 | 110 | Chr3: 19043565-19043674 | Arabidopsis thaliana |
AT3G51290:exon:10 | 64 | Chr3: 19043758-19043821 | Arabidopsis thaliana |
AT3G51290:exon:11 | 131 | Chr3: 19043902-19044032 | Arabidopsis thaliana |
AT3G51290:exon:12 | 258 | Chr3: 19044114-19044371 | Arabidopsis thaliana |
AT3G51290:exon:2 | 727 | Chr3: 19039980-19040706 | Arabidopsis thaliana |
AT3G51290:exon:3 | 197 | Chr3: 19040779-19040975 | Arabidopsis thaliana |
AT3G51290:exon:4 | 224 | Chr3: 19041350-19041573 | Arabidopsis thaliana |
AT3G51290:exon:7 | 889 | Chr3: 19041681-19042569 | Arabidopsis thaliana |
AT3G51300:exon:1 | 438 | Chr3: 19042858-19043295 | Arabidopsis thaliana |
AT3G51300:exon:2 | 88 | Chr3: 19043386-19043473 | Arabidopsis thaliana |
AT3G51300:exon:3 | 110 | Chr3: 19043565-19043674 | Arabidopsis thaliana |
AT3G51300:exon:4 | 64 | Chr3: 19043758-19043821 | Arabidopsis thaliana |
AT3G51300:exon:5 | 131 | Chr3: 19043902-19044032 | Arabidopsis thaliana |
AT3G51300:exon:6 | 280 | Chr3: 19044114-19044393 | Arabidopsis thaliana |
AT3G51310:exon:21 | 517 | Chr3: 19044331-19044847 | Arabidopsis thaliana |
Five Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT3G51290:five_prime_UTR:1 | 468 | Chr3: 19039512-19039979 | Arabidopsis thaliana |
AT3G51300:five_prime_UTR:1 | 339 | Chr3: 19042858-19043196 | Arabidopsis thaliana |
Genes
DB identifier | Secondary Identifier | Symbol | Name | Length | Chromosome Location |
Organism . Short Name |
TAIR Computational Description | TAIR Curator Summary | TAIR Short Description | TAIR Aliases |
---|---|---|---|---|---|---|---|---|---|---|
AT3G51300 | locus:2080878 | ROP1 | RHO-related protein from plants 1 | 1536 | Chr3: 19042858-19044393 | A. thaliana | RHO-related protein from plants 1;(source:Araport11) | Encodes a pollen-specific Rop GTPase, member of the Rho family of small GTP binding proteins that interacts with RIC3 and RIC4 to control tip growth in pollen tubes. These three proteins promote the proper targeting of exocytic vesicles in the pollen tube tip. ROP1 activity is regulated by the REN1 GTPase activator protein. | RHO-related protein from plants 1 | ARAC11, ATRAC11, ATROP1, ROP1, ROP1AT |
AT3G51310 | locus:2080888 | VPS35C | VPS35 homolog C | 5124 | Chr3: 19044331-19049454 | A. thaliana | VPS35 homolog C;(source:Araport11) | Homolog of yeast retromer subunit VPS35. Part of a retromer-like protein complex involved in endosome to lysosome protein transport. | VPS35 homolog C | VPS35C |
mRNAs
DB identifier | Length | Chromosome Location |
---|---|---|
AT3G51290.3 | 2592 | Chr3: 19039512-19042638 |
AT3G51290.2 | 3021 | Chr3: 19039512-19044371 |
AT3G51290.1 | 2037 | Chr3: 19039980-19042569 |
AT3G51300.1 | 1111 | Chr3: 19042858-19044393 |
AT3G51310.1 | 2809 | Chr3: 19044331-19049454 |
Three Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT3G51290:three_prime_UTR:2 | 201 | Chr3: 19042438-19042638 | Arabidopsis thaliana |
AT3G51290:three_prime_UTR:3 | 156 | Chr3: 19044216-19044371 | Arabidopsis thaliana |
AT3G51290:three_prime_UTR:1 | 132 | Chr3: 19042438-19042569 | Arabidopsis thaliana |
AT3G51300:three_prime_UTR:1 | 178 | Chr3: 19044216-19044393 | Arabidopsis thaliana |
AT3G51310:three_prime_UTR:1 | 303 | Chr3: 19044331-19044633 | Arabidopsis thaliana |
Proteins
Curated comments from UniProt
Type | Comment | Proteins |
---|---|---|
APSR1_ARATH | function | Required for the coordination of cell differentiation and cell elongation in the root tip (PubMed:23498857). Required for the coordination of cell processes necessary for correct root growth in response to phosphate starvation, through the modulation of the auxin transporter protein PIN7 (PubMed:23498857). |
APSR1_ARATH | tissue specificity | Expressed in the root tip of primary and lateral roots, specifically in the meristematic region, including the quiescent center and lateral root cap cells. |
Function
Gene Ontology
cellular component | |
---|---|
nucleus | ECO |
molecular function | |
No terms in this category. | |
biological process | |
No terms in this category. |
Interactions
Interaction Network
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Expression
Co-expression
Querying ATTED Service...
Data Source: ATTED-II |
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Top N
LS: LS is a monotonic transformation (negative logit) of MR index. Larger LS indicates stronger co-expression.
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