External Links
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Genomics
Overlapping Features
Genome features that overlap coordinates of this Gene
CDSs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT3G50380:CDS:43 | 357 | Chr3: 18686527-18686883 | Arabidopsis thaliana |
AT3G50380:CDS:42 | 141 | Chr3: 18686962-18687102 | Arabidopsis thaliana |
AT3G50380:CDS:41 | 84 | Chr3: 18687237-18687320 | Arabidopsis thaliana |
AT3G50380:CDS:40 | 123 | Chr3: 18687462-18687584 | Arabidopsis thaliana |
AT3G50380:CDS:39 | 96 | Chr3: 18687669-18687764 | Arabidopsis thaliana |
AT3G50380:CDS:38 | 83 | Chr3: 18687843-18687925 | Arabidopsis thaliana |
AT3G50380:CDS:37 | 149 | Chr3: 18688028-18688176 | Arabidopsis thaliana |
AT3G50380:CDS:36 | 107 | Chr3: 18688264-18688370 | Arabidopsis thaliana |
AT3G50380:CDS:35 | 90 | Chr3: 18688483-18688572 | Arabidopsis thaliana |
AT3G50380:CDS:34 | 126 | Chr3: 18688671-18688796 | Arabidopsis thaliana |
AT3G50380:CDS:33 | 168 | Chr3: 18688972-18689139 | Arabidopsis thaliana |
AT3G50380:CDS:32 | 117 | Chr3: 18689224-18689340 | Arabidopsis thaliana |
AT3G50380:CDS:31 | 320 | Chr3: 18689448-18689767 | Arabidopsis thaliana |
AT3G50380:CDS:30 | 97 | Chr3: 18689933-18690029 | Arabidopsis thaliana |
AT3G50380:CDS:28 | 399 | Chr3: 18690118-18690516 | Arabidopsis thaliana |
AT3G50380:CDS:25 | 265 | Chr3: 18690608-18690872 | Arabidopsis thaliana |
AT3G50380:CDS:23 | 87 | Chr3: 18690951-18691037 | Arabidopsis thaliana |
AT3G50380:CDS:22 | 86 | Chr3: 18691108-18691193 | Arabidopsis thaliana |
AT3G50380:CDS:21 | 278 | Chr3: 18691268-18691545 | Arabidopsis thaliana |
AT3G50380:CDS:20 | 420 | Chr3: 18691617-18692036 | Arabidopsis thaliana |
AT3G50380:CDS:19 | 214 | Chr3: 18692312-18692525 | Arabidopsis thaliana |
AT3G50380:CDS:18 | 56 | Chr3: 18692631-18692686 | Arabidopsis thaliana |
AT3G50380:CDS:17 | 143 | Chr3: 18692785-18692927 | Arabidopsis thaliana |
AT3G50380:CDS:16 | 95 | Chr3: 18693231-18693325 | Arabidopsis thaliana |
AT3G50380:CDS:15 | 117 | Chr3: 18693425-18693541 | Arabidopsis thaliana |
AT3G50380:CDS:14 | 118 | Chr3: 18693626-18693743 | Arabidopsis thaliana |
AT3G50380:CDS:13 | 635 | Chr3: 18693869-18694503 | Arabidopsis thaliana |
AT3G50380:CDS:12 | 125 | Chr3: 18694653-18694777 | Arabidopsis thaliana |
AT3G50380:CDS:11 | 127 | Chr3: 18694852-18694978 | Arabidopsis thaliana |
AT3G50380:CDS:10 | 473 | Chr3: 18695097-18695569 | Arabidopsis thaliana |
Exons
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT3G50380:exon:7 | 560 | Chr3: 18697779-18698338 | Arabidopsis thaliana |
AT3G50380:exon:5 | 1408 | Chr3: 18698590-18699997 | Arabidopsis thaliana |
AT3G50380:exon:46 | 516 | Chr3: 18686368-18686883 | Arabidopsis thaliana |
AT3G50380:exon:8 | 115 | Chr3: 18697339-18697453 | Arabidopsis thaliana |
AT3G50380:exon:1 | 458 | Chr3: 18700253-18700710 | Arabidopsis thaliana |
AT3G50380:exon:31 | 166 | Chr3: 18690118-18690283 | Arabidopsis thaliana |
AT3G50380:exon:29 | 158 | Chr3: 18690359-18690516 | Arabidopsis thaliana |
AT3G50380:exon:28 | 58 | Chr3: 18690608-18690665 | Arabidopsis thaliana |
AT3G50380:exon:26 | 123 | Chr3: 18690750-18690872 | Arabidopsis thaliana |
AT3G50380:exon:3 | 281 | Chr3: 18700253-18700533 | Arabidopsis thaliana |
AT3G50380:exon:45 | 441 | Chr3: 18686443-18686883 | Arabidopsis thaliana |
AT3G50380:exon:44 | 141 | Chr3: 18686962-18687102 | Arabidopsis thaliana |
AT3G50380:exon:43 | 84 | Chr3: 18687237-18687320 | Arabidopsis thaliana |
AT3G50380:exon:42 | 123 | Chr3: 18687462-18687584 | Arabidopsis thaliana |
AT3G50380:exon:41 | 96 | Chr3: 18687669-18687764 | Arabidopsis thaliana |
AT3G50380:exon:40 | 83 | Chr3: 18687843-18687925 | Arabidopsis thaliana |
AT3G50380:exon:39 | 149 | Chr3: 18688028-18688176 | Arabidopsis thaliana |
AT3G50380:exon:38 | 107 | Chr3: 18688264-18688370 | Arabidopsis thaliana |
AT3G50380:exon:37 | 90 | Chr3: 18688483-18688572 | Arabidopsis thaliana |
AT3G50380:exon:36 | 126 | Chr3: 18688671-18688796 | Arabidopsis thaliana |
AT3G50380:exon:35 | 168 | Chr3: 18688972-18689139 | Arabidopsis thaliana |
AT3G50380:exon:34 | 117 | Chr3: 18689224-18689340 | Arabidopsis thaliana |
AT3G50380:exon:33 | 320 | Chr3: 18689448-18689767 | Arabidopsis thaliana |
AT3G50380:exon:32 | 97 | Chr3: 18689933-18690029 | Arabidopsis thaliana |
AT3G50380:exon:30 | 399 | Chr3: 18690118-18690516 | Arabidopsis thaliana |
AT3G50380:exon:27 | 265 | Chr3: 18690608-18690872 | Arabidopsis thaliana |
AT3G50380:exon:25 | 87 | Chr3: 18690951-18691037 | Arabidopsis thaliana |
AT3G50380:exon:24 | 86 | Chr3: 18691108-18691193 | Arabidopsis thaliana |
AT3G50380:exon:23 | 278 | Chr3: 18691268-18691545 | Arabidopsis thaliana |
AT3G50380:exon:22 | 420 | Chr3: 18691617-18692036 | Arabidopsis thaliana |
Five Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT3G50380:five_prime_UTR:5 | 1387 | Chr3: 18698611-18699997 | Arabidopsis thaliana |
AT3G50380:five_prime_UTR:4 | 94 | Chr3: 18700074-18700167 | Arabidopsis thaliana |
AT3G50380:five_prime_UTR:3 | 458 | Chr3: 18700253-18700710 | Arabidopsis thaliana |
AT3G50380:five_prime_UTR:1 | 177 | Chr3: 18700534-18700710 | Arabidopsis thaliana |
AT3G50380:five_prime_UTR:2 | 120 | Chr3: 18700534-18700653 | Arabidopsis thaliana |
mRNAs
DB identifier | Length | Chromosome Location |
---|---|---|
AT3G50380.3 | 9484 | Chr3: 18686368-18700710 |
AT3G50380.2 | 9735 | Chr3: 18686368-18700710 |
AT3G50380.1 | 9303 | Chr3: 18686443-18700533 |
AT3G50380.4 | 9582 | Chr3: 18686443-18700653 |
Three Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT3G50380:three_prime_UTR:2 | 159 | Chr3: 18686368-18686526 | Arabidopsis thaliana |
AT3G50380:three_prime_UTR:1 | 84 | Chr3: 18686443-18686526 | Arabidopsis thaliana |
Proteins
Curated comments from UniProt
Type | Comment | Proteins |
---|---|---|
A0A1I9LQ67_ARATH F4J0L9_ARATH A0A1I9LQ66_ARATH A0A1I9LQ65_ARATH | similarity | Belongs to the VPS13 family. |
Function
Gene Ontology
cellular component | |
---|---|
No terms in this category. | |
molecular function | |
No terms in this category. | |
biological process | |
protein retention in Golgi apparatus | ECO |
protein targeting to vacuole | ECO |
Interactions
Interaction Network
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Expression
Co-expression
Querying ATTED Service...
Data Source: ATTED-II |
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Top N
LS: LS is a monotonic transformation (negative logit) of MR index. Larger LS indicates stronger co-expression.
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