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Gene : IRX15 A. thaliana

DB identifier  ? AT3G50220 Secondary Identifier  ? locus:2074815
Name  ? IRREGULAR XYLEM 15 Brief Description  IRREGULAR XYLEM protein (DUF579)
TAIR Computational Description  IRREGULAR XYLEM protein (DUF579);(source:Araport11)
TAIR Curator Summary  Encode a DUF579 (domain of unknown function 579) containing protein essential for normal xylan synthesis and deposition in the secondary cell wall.
TAIR Short Description  Protein of unknown function (DUF579)
TAIR Aliases  IRX15

2 Gene Rifs

1 Organism

9 Publications

0 Synonyms

Genomics

Genome feature

Region: gene ? Length: 1393  
Location: Chr3:18617424-18618816 reverse strand

Gene models - IRX15 AT3G50220

? Gene models

Transcripts: 1  Exons: 1 

Overlapping Features

? Genome features that overlap coordinates of this Gene

2 Child Features

1 Cross References

1 Downstream Intergenic Region

0 Located Features

1 Upstream Intergenic Region

Proteins

Curated comments from UniProt

Type Comment Proteins
IRX15_ARATH developmental stage Up-regulated during secondary cell wall deposition.
IRX15_ARATH function Required for xylan biosynthesis, but not directly involved in catalyzing the addition of sugars to the growing polymer.
IRX15_ARATH subcellular location Also located in an unknown intracellular compartment that may have some role in the transport of cell wall polysaccharides into the cell wall.
IRX15_ARATH tissue specificity Expressed in rosette leaves, stems and siliques. Expressed in the xylem.

1 Proteins

Function

Gene Ontology

cellular component
Golgi apparatus  ? ECO  
Golgi membrane  ? ECO  
molecular function
No terms in this category.
biological process
plant-type secondary cell wall biogenesis  ? ECO  
xylan biosynthetic process  ? ECO  

Interactions

Interaction Network

Expression

eFP Visualization

Data Source: BAR




Co-expression

Querying ATTED Service...
Data Source: ATTED-II
Top N
LS: LS is a monotonic transformation (negative logit) of MR index. Larger LS indicates stronger co-expression.

 

Homology

Phytozome Homologs

Data Source: Phytozome


0 Homologues

 

Other

9 Data Sets