External Links
- Aracyc
- AceView
- Plant Proteome Database
- SUBA
- Gramene
- GeneVisible
- ABRC
- TAIR
- EnsemblPlants
- PGDD
- AtcisDB
- Plaza
- pep2pro
- NCBI-Entrez
- PIR
- AtGDB
- Agrisera Antibodies
- ATTED-II
- T-DNA Express
- AtGenExpress
- AthaMap
- Phytozome
Genomics
Overlapping Features
Genome features that overlap coordinates of this Gene
CDSs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT3G50040:CDS:5 | 168 | Chr3: 18549489-18549656 | Arabidopsis thaliana |
AT3G50040:CDS:3 | 422 | Chr3: 18549752-18550173 | Arabidopsis thaliana |
AT3G50040:CDS:2 | 45 | Chr3: 18550257-18550301 | Arabidopsis thaliana |
AT3G50040:CDS:1 | 631 | Chr3: 18550389-18551019 | Arabidopsis thaliana |
AT3G50040:CDS:4 | 452 | Chr3: 18549722-18550173 | Arabidopsis thaliana |
AT3G50040:CDS:2.1 | 45 | Chr3: 18550257-18550301 | Arabidopsis thaliana |
AT3G50040:CDS:1.1 | 631 | Chr3: 18550389-18551019 | Arabidopsis thaliana |
AT3G50040:CDS:5.1 | 168 | Chr3: 18549489-18549656 | Arabidopsis thaliana |
AT3G50040:CDS:3.1 | 422 | Chr3: 18549752-18550173 | Arabidopsis thaliana |
AT3G50040:CDS:2.2 | 45 | Chr3: 18550257-18550301 | Arabidopsis thaliana |
AT3G50040:CDS:1.2 | 631 | Chr3: 18550389-18551019 | Arabidopsis thaliana |
AT3G50040:CDS:5.2 | 168 | Chr3: 18549489-18549656 | Arabidopsis thaliana |
AT3G50040:CDS:3.2 | 422 | Chr3: 18549752-18550173 | Arabidopsis thaliana |
AT3G50040:CDS:2.3 | 45 | Chr3: 18550257-18550301 | Arabidopsis thaliana |
AT3G50040:CDS:1.3 | 631 | Chr3: 18550389-18551019 | Arabidopsis thaliana |
Exons
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT3G50040:exon:2 | 201 | Chr3: 18551127-18551327 | Arabidopsis thaliana |
AT3G50040:exon:8 | 970 | Chr3: 18549204-18550173 | Arabidopsis thaliana |
AT3G50040:exon:9 | 453 | Chr3: 18549204-18549656 | Arabidopsis thaliana |
AT3G50040:exon:4 | 652 | Chr3: 18550389-18551040 | Arabidopsis thaliana |
AT3G50040:exon:1 | 40 | Chr3: 18551336-18551375 | Arabidopsis thaliana |
AT3G50040:exon:7 | 424 | Chr3: 18549233-18549656 | Arabidopsis thaliana |
AT3G50040:exon:6 | 422 | Chr3: 18549752-18550173 | Arabidopsis thaliana |
AT3G50040:exon:5 | 45 | Chr3: 18550257-18550301 | Arabidopsis thaliana |
AT3G50040:exon:3 | 653 | Chr3: 18550389-18551041 | Arabidopsis thaliana |
Five Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT3G50040:five_prime_UTR:2 | 201 | Chr3: 18551127-18551327 | Arabidopsis thaliana |
AT3G50040:five_prime_UTR:4 | 21 | Chr3: 18551020-18551040 | Arabidopsis thaliana |
AT3G50040:five_prime_UTR:1 | 40 | Chr3: 18551336-18551375 | Arabidopsis thaliana |
AT3G50040:five_prime_UTR:3 | 22 | Chr3: 18551020-18551041 | Arabidopsis thaliana |
mRNAs
DB identifier | Length | Chromosome Location |
---|---|---|
AT3G50040.2 | 1773 | Chr3: 18549204-18551327 |
AT3G50040.3 | 1707 | Chr3: 18549204-18551375 |
AT3G50040.4 | 1612 | Chr3: 18549204-18551375 |
AT3G50040.1 | 1544 | Chr3: 18549233-18551041 |
Three Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT3G50040:three_prime_UTR:2 | 518 | Chr3: 18549204-18549721 | Arabidopsis thaliana |
AT3G50040:three_prime_UTR:3 | 285 | Chr3: 18549204-18549488 | Arabidopsis thaliana |
AT3G50040:three_prime_UTR:1 | 256 | Chr3: 18549233-18549488 | Arabidopsis thaliana |
Function
Gene Ontology
cellular component | |
---|---|
No terms in this category. | |
molecular function | |
No terms in this category. | |
biological process | |
No terms in this category. |
Interactions
Interaction Network
Show the following interaction types:
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Expression
Co-expression
Querying ATTED Service...
Data Source: ATTED-II |
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Top N
LS: LS is a monotonic transformation (negative logit) of MR index. Larger LS indicates stronger co-expression.
Waiting for results...