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Genomics
Overlapping Features
Genome features that overlap coordinates of this Gene
CDSs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT3G49640:CDS:13 | 82 | Chr3: 18400480-18400561 | Arabidopsis thaliana |
AT3G49640:CDS:11 | 128 | Chr3: 18400783-18400910 | Arabidopsis thaliana |
AT3G49640:CDS:10 | 107 | Chr3: 18400994-18401100 | Arabidopsis thaliana |
AT3G49640:CDS:8 | 137 | Chr3: 18401255-18401391 | Arabidopsis thaliana |
AT3G49640:CDS:7 | 137 | Chr3: 18401483-18401619 | Arabidopsis thaliana |
AT3G49640:CDS:6 | 109 | Chr3: 18401708-18401816 | Arabidopsis thaliana |
AT3G49640:CDS:5 | 139 | Chr3: 18401915-18402053 | Arabidopsis thaliana |
AT3G49640:CDS:2 | 106 | Chr3: 18402574-18402679 | Arabidopsis thaliana |
AT3G49640:CDS:1 | 45 | Chr3: 18402765-18402809 | Arabidopsis thaliana |
AT3G49640:CDS:13.1 | 82 | Chr3: 18400480-18400561 | Arabidopsis thaliana |
AT3G49640:CDS:11.1 | 128 | Chr3: 18400783-18400910 | Arabidopsis thaliana |
AT3G49640:CDS:10.1 | 107 | Chr3: 18400994-18401100 | Arabidopsis thaliana |
AT3G49640:CDS:8.1 | 137 | Chr3: 18401255-18401391 | Arabidopsis thaliana |
AT3G49640:CDS:7.1 | 137 | Chr3: 18401483-18401619 | Arabidopsis thaliana |
AT3G49640:CDS:6.1 | 109 | Chr3: 18401708-18401816 | Arabidopsis thaliana |
AT3G49640:CDS:4 | 153 | Chr3: 18401915-18402067 | Arabidopsis thaliana |
AT3G49640:CDS:3 | 20 | Chr3: 18402574-18402593 | Arabidopsis thaliana |
AT3G49640:CDS:12 | 132 | Chr3: 18400779-18400910 | Arabidopsis thaliana |
AT3G49640:CDS:10.2 | 107 | Chr3: 18400994-18401100 | Arabidopsis thaliana |
AT3G49640:CDS:8.2 | 137 | Chr3: 18401255-18401391 | Arabidopsis thaliana |
AT3G49640:CDS:7.2 | 137 | Chr3: 18401483-18401619 | Arabidopsis thaliana |
AT3G49640:CDS:6.2 | 109 | Chr3: 18401708-18401816 | Arabidopsis thaliana |
AT3G49640:CDS:4.1 | 153 | Chr3: 18401915-18402067 | Arabidopsis thaliana |
AT3G49640:CDS:3.1 | 20 | Chr3: 18402574-18402593 | Arabidopsis thaliana |
AT3G49640:CDS:12.1 | 132 | Chr3: 18400779-18400910 | Arabidopsis thaliana |
AT3G49640:CDS:10.3 | 107 | Chr3: 18400994-18401100 | Arabidopsis thaliana |
AT3G49640:CDS:8.3 | 137 | Chr3: 18401255-18401391 | Arabidopsis thaliana |
AT3G49640:CDS:7.3 | 137 | Chr3: 18401483-18401619 | Arabidopsis thaliana |
AT3G49640:CDS:6.3 | 109 | Chr3: 18401708-18401816 | Arabidopsis thaliana |
AT3G49640:CDS:5.1 | 139 | Chr3: 18401915-18402053 | Arabidopsis thaliana |
Exons
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT3G49630:exon:14 | 174 | Chr3: 18400103-18400276 | Arabidopsis thaliana |
AT3G49630:exon:15 | 538 | Chr3: 18400103-18400640 | Arabidopsis thaliana |
AT3G49640:exon:14 | 305 | Chr3: 18400257-18400561 | Arabidopsis thaliana |
AT3G49640:exon:12 | 128 | Chr3: 18400783-18400910 | Arabidopsis thaliana |
AT3G49640:exon:2 | 193 | Chr3: 18402765-18402957 | Arabidopsis thaliana |
AT3G49640:exon:5 | 153 | Chr3: 18401915-18402067 | Arabidopsis thaliana |
AT3G49640:exon:3 | 117 | Chr3: 18402765-18402881 | Arabidopsis thaliana |
AT3G49640:exon:11 | 107 | Chr3: 18400994-18401100 | Arabidopsis thaliana |
AT3G49640:exon:9 | 137 | Chr3: 18401255-18401391 | Arabidopsis thaliana |
AT3G49640:exon:13 | 640 | Chr3: 18400271-18400910 | Arabidopsis thaliana |
AT3G49640:exon:10 | 398 | Chr3: 18400994-18401391 | Arabidopsis thaliana |
AT3G49640:exon:8 | 137 | Chr3: 18401483-18401619 | Arabidopsis thaliana |
AT3G49640:exon:7 | 109 | Chr3: 18401708-18401816 | Arabidopsis thaliana |
AT3G49640:exon:6 | 139 | Chr3: 18401915-18402053 | Arabidopsis thaliana |
AT3G49640:exon:4 | 106 | Chr3: 18402574-18402679 | Arabidopsis thaliana |
AT3G49640:exon:1 | 198 | Chr3: 18402765-18402962 | Arabidopsis thaliana |
Five Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT3G49640:five_prime_UTR:2 | 148 | Chr3: 18402810-18402957 | Arabidopsis thaliana |
AT3G49640:five_prime_UTR:3 | 193 | Chr3: 18402765-18402957 | Arabidopsis thaliana |
AT3G49640:five_prime_UTR:5 | 86 | Chr3: 18402594-18402679 | Arabidopsis thaliana |
AT3G49640:five_prime_UTR:4 | 117 | Chr3: 18402765-18402881 | Arabidopsis thaliana |
AT3G49640:five_prime_UTR:1 | 153 | Chr3: 18402810-18402962 | Arabidopsis thaliana |
Genes
DB identifier | Secondary Identifier | Symbol | Name | Length | Chromosome Location |
Organism . Short Name |
TAIR Computational Description | TAIR Curator Summary | TAIR Short Description | TAIR Aliases |
---|---|---|---|---|---|---|---|---|---|---|
AT3G49630 | locus:2114698 | AT3G49630 | 2916 | Chr3: 18397725-18400640 | A. thaliana | 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein;(source:Araport11) | NULL | 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein |
mRNAs
DB identifier | Length | Chromosome Location |
---|---|---|
AT3G49630.1 | 1054 | Chr3: 18397725-18400276 |
AT3G49630.2 | 1441 | Chr3: 18397725-18400276 |
AT3G49630.3 | 1392 | Chr3: 18397862-18400640 |
AT3G49640.1 | 1361 | Chr3: 18400257-18402957 |
AT3G49640.2 | 1375 | Chr3: 18400257-18402957 |
AT3G49640.5 | 1506 | Chr3: 18400271-18402881 |
AT3G49640.4 | 1573 | Chr3: 18400271-18402962 |
AT3G49640.3 | 1727 | Chr3: 18400271-18402962 |
Three Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT3G49630:three_prime_UTR:1 | 21 | Chr3: 18400256-18400276 | Arabidopsis thaliana |
AT3G49630:three_prime_UTR:2 | 385 | Chr3: 18400256-18400640 | Arabidopsis thaliana |
AT3G49640:three_prime_UTR:4 | 223 | Chr3: 18400257-18400479 | Arabidopsis thaliana |
AT3G49640:three_prime_UTR:3 | 508 | Chr3: 18400271-18400778 | Arabidopsis thaliana |
AT3G49640:three_prime_UTR:2 | 640 | Chr3: 18400271-18400910 | Arabidopsis thaliana |
AT3G49640:three_prime_UTR:1 | 178 | Chr3: 18400994-18401171 | Arabidopsis thaliana |
Proteins
Curated comments from UniProt
Type | Comment | Proteins |
---|---|---|
A0A1I9LMB8_ARATH | function | Catalyzes the synthesis of dihydrouridine, a modified base found in the D-loop of most tRNAs. |
A0A1I9LMB8_ARATH | similarity | Belongs to the dus family. |
Function
Gene Ontology
cellular component | |
---|---|
No terms in this category. | |
molecular function | |
flavin adenine dinucleotide binding | ECO |
tRNA dihydrouridine synthase activity | ECO |
biological process | |
No terms in this category. |
Interactions
Interaction Network
Show the following interaction types:
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Expression
Co-expression
Querying ATTED Service...
Data Source: ATTED-II |
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Top N
LS: LS is a monotonic transformation (negative logit) of MR index. Larger LS indicates stronger co-expression.
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