External Links
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- ATTED-II
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Genomics
Overlapping Features
Genome features that overlap coordinates of this Gene
CDSs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT3G47560:CDS:9 | 205 | Chr3: 17525575-17525779 | Arabidopsis thaliana |
AT3G47560:CDS:7 | 331 | Chr3: 17525859-17526189 | Arabidopsis thaliana |
AT3G47560:CDS:5 | 122 | Chr3: 17526287-17526408 | Arabidopsis thaliana |
AT3G47560:CDS:3 | 83 | Chr3: 17526490-17526572 | Arabidopsis thaliana |
AT3G47560:CDS:2 | 135 | Chr3: 17526843-17526977 | Arabidopsis thaliana |
AT3G47560:CDS:9.1 | 205 | Chr3: 17525575-17525779 | Arabidopsis thaliana |
AT3G47560:CDS:8 | 94 | Chr3: 17525859-17525952 | Arabidopsis thaliana |
AT3G47560:CDS:6 | 159 | Chr3: 17526031-17526189 | Arabidopsis thaliana |
AT3G47560:CDS:5.1 | 122 | Chr3: 17526287-17526408 | Arabidopsis thaliana |
AT3G47560:CDS:3.1 | 83 | Chr3: 17526490-17526572 | Arabidopsis thaliana |
AT3G47560:CDS:2.1 | 135 | Chr3: 17526843-17526977 | Arabidopsis thaliana |
AT3G47560:CDS:9.2 | 205 | Chr3: 17525575-17525779 | Arabidopsis thaliana |
AT3G47560:CDS:8.1 | 94 | Chr3: 17525859-17525952 | Arabidopsis thaliana |
AT3G47560:CDS:6.1 | 159 | Chr3: 17526031-17526189 | Arabidopsis thaliana |
AT3G47560:CDS:5.2 | 122 | Chr3: 17526287-17526408 | Arabidopsis thaliana |
AT3G47560:CDS:3.2 | 83 | Chr3: 17526490-17526572 | Arabidopsis thaliana |
AT3G47560:CDS:1 | 243 | Chr3: 17526843-17527085 | Arabidopsis thaliana |
AT3G47560:CDS:9.3 | 205 | Chr3: 17525575-17525779 | Arabidopsis thaliana |
AT3G47560:CDS:7.1 | 331 | Chr3: 17525859-17526189 | Arabidopsis thaliana |
AT3G47560:CDS:4 | 286 | Chr3: 17526287-17526572 | Arabidopsis thaliana |
AT3G47560:CDS:2.2 | 135 | Chr3: 17526843-17526977 | Arabidopsis thaliana |
AT3G47560:CDS:9.4 | 205 | Chr3: 17525575-17525779 | Arabidopsis thaliana |
AT3G47560:CDS:8.2 | 94 | Chr3: 17525859-17525952 | Arabidopsis thaliana |
AT3G47560:CDS:6.2 | 159 | Chr3: 17526031-17526189 | Arabidopsis thaliana |
AT3G47560:CDS:4.1 | 286 | Chr3: 17526287-17526572 | Arabidopsis thaliana |
AT3G47560:CDS:2.3 | 135 | Chr3: 17526843-17526977 | Arabidopsis thaliana |
Exons
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT3G47550:exon:13 | 381 | Chr3: 17525160-17525540 | Arabidopsis thaliana |
AT3G47550:exon:12 | 388 | Chr3: 17525153-17525540 | Arabidopsis thaliana |
AT3G47560:exon:13 | 304 | Chr3: 17525476-17525779 | Arabidopsis thaliana |
AT3G47560:exon:3 | 225 | Chr3: 17526843-17527067 | Arabidopsis thaliana |
AT3G47560:exon:12 | 295 | Chr3: 17525485-17525779 | Arabidopsis thaliana |
AT3G47560:exon:7 | 122 | Chr3: 17526287-17526408 | Arabidopsis thaliana |
AT3G47560:exon:5 | 83 | Chr3: 17526490-17526572 | Arabidopsis thaliana |
AT3G47560:exon:1 | 320 | Chr3: 17526843-17527162 | Arabidopsis thaliana |
AT3G47560:exon:9 | 331 | Chr3: 17525859-17526189 | Arabidopsis thaliana |
AT3G47560:exon:4 | 136 | Chr3: 17526843-17526978 | Arabidopsis thaliana |
AT3G47560:exon:11 | 294 | Chr3: 17525486-17525779 | Arabidopsis thaliana |
AT3G47560:exon:10 | 94 | Chr3: 17525859-17525952 | Arabidopsis thaliana |
AT3G47560:exon:8 | 159 | Chr3: 17526031-17526189 | Arabidopsis thaliana |
AT3G47560:exon:6 | 286 | Chr3: 17526287-17526572 | Arabidopsis thaliana |
AT3G47560:exon:2 | 229 | Chr3: 17526843-17527071 | Arabidopsis thaliana |
Five Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT3G47560:five_prime_UTR:3 | 90 | Chr3: 17526978-17527067 | Arabidopsis thaliana |
AT3G47560:five_prime_UTR:1 | 77 | Chr3: 17527086-17527162 | Arabidopsis thaliana |
AT3G47560:five_prime_UTR:4 | 1 | Chr3: 17526978-17526978 | Arabidopsis thaliana |
AT3G47560:five_prime_UTR:2 | 94 | Chr3: 17526978-17527071 | Arabidopsis thaliana |
Genes
DB identifier | Secondary Identifier | Symbol | Name | Length | Chromosome Location |
Organism . Short Name |
TAIR Computational Description | TAIR Curator Summary | TAIR Short Description | TAIR Aliases |
---|---|---|---|---|---|---|---|---|---|---|
AT3G47550 | locus:2079112 | AT3G47550 | 2174 | Chr3: 17523367-17525540 | A. thaliana | RING/FYVE/PHD zinc finger superfamily protein;(source:Araport11) | NULL | RING/FYVE/PHD zinc finger superfamily protein |
mRNAs
DB identifier | Length | Chromosome Location |
---|---|---|
AT3G47550.3 | 1409 | Chr3: 17523367-17525540 |
AT3G47550.1 | 1430 | Chr3: 17523416-17525540 |
AT3G47550.2 | 1505 | Chr3: 17523458-17525540 |
AT3G47550.6 | 1472 | Chr3: 17523498-17525540 |
AT3G47560.3 | 1065 | Chr3: 17525476-17527067 |
AT3G47560.1 | 987 | Chr3: 17525476-17527067 |
AT3G47560.4 | 1073 | Chr3: 17525485-17527162 |
AT3G47560.2 | 1047 | Chr3: 17525486-17526978 |
AT3G47560.5 | 1062 | Chr3: 17525486-17527071 |
Three Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT3G47550:three_prime_UTR:2 | 388 | Chr3: 17525153-17525540 | Arabidopsis thaliana |
AT3G47550:three_prime_UTR:3 | 372 | Chr3: 17525169-17525540 | Arabidopsis thaliana |
AT3G47550:three_prime_UTR:4 | 262 | Chr3: 17525279-17525540 | Arabidopsis thaliana |
AT3G47560:three_prime_UTR:3 | 99 | Chr3: 17525476-17525574 | Arabidopsis thaliana |
AT3G47560:three_prime_UTR:2 | 90 | Chr3: 17525485-17525574 | Arabidopsis thaliana |
AT3G47560:three_prime_UTR:1 | 89 | Chr3: 17525486-17525574 | Arabidopsis thaliana |
Function
Gene Ontology
cellular component | |
---|---|
No terms in this category. | |
molecular function | |
No terms in this category. | |
biological process | |
No terms in this category. |
Interactions
Interaction Network
Show the following interaction types:
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Expression
Co-expression
Querying ATTED Service...
Data Source: ATTED-II |
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Top N
LS: LS is a monotonic transformation (negative logit) of MR index. Larger LS indicates stronger co-expression.
Waiting for results...