External Links
- Aracyc
- AceView
- Plant Proteome Database
- SUBA
- Gramene
- GeneVisible
- ABRC
- TAIR
- EnsemblPlants
- PGDD
- AtcisDB
- Plaza
- pep2pro
- NCBI-Entrez
- PIR
- AtGDB
- Agrisera Antibodies
- ATTED-II
- T-DNA Express
- AtGenExpress
- AthaMap
- Phytozome
Genomics
Overlapping Features
Genome features that overlap coordinates of this Gene
CDSs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT3G47490:CDS:1 | 558 | Chr3: 17498277-17498834 | Arabidopsis thaliana |
AT3G47490:CDS:7 | 72 | Chr3: 17500099-17500170 | Arabidopsis thaliana |
AT3G47490:CDS:1.1 | 558 | Chr3: 17498277-17498834 | Arabidopsis thaliana |
AT3G47490:CDS:6 | 39 | Chr3: 17500099-17500137 | Arabidopsis thaliana |
AT3G47490:CDS:8 | 85 | Chr3: 17500484-17500568 | Arabidopsis thaliana |
AT3G47490:CDS:9 | 83 | Chr3: 17500649-17500731 | Arabidopsis thaliana |
AT3G47490:CDS:1.2 | 558 | Chr3: 17498277-17498834 | Arabidopsis thaliana |
AT3G47490:CDS:7.1 | 72 | Chr3: 17500099-17500170 | Arabidopsis thaliana |
AT3G47490:CDS:4 | 381 | Chr3: 17498454-17498834 | Arabidopsis thaliana |
AT3G47490:CDS:5 | 60 | Chr3: 17499590-17499649 | Arabidopsis thaliana |
AT3G47490:CDS:6.1 | 39 | Chr3: 17500099-17500137 | Arabidopsis thaliana |
AT3G47490:CDS:8.1 | 85 | Chr3: 17500484-17500568 | Arabidopsis thaliana |
AT3G47490:CDS:9.1 | 83 | Chr3: 17500649-17500731 | Arabidopsis thaliana |
AT3G47490:CDS:2 | 498 | Chr3: 17498337-17498834 | Arabidopsis thaliana |
AT3G47490:CDS:6.2 | 39 | Chr3: 17500099-17500137 | Arabidopsis thaliana |
AT3G47490:CDS:8.2 | 85 | Chr3: 17500484-17500568 | Arabidopsis thaliana |
AT3G47490:CDS:9.2 | 83 | Chr3: 17500649-17500731 | Arabidopsis thaliana |
AT3G47490:CDS:2.1 | 498 | Chr3: 17498337-17498834 | Arabidopsis thaliana |
AT3G47490:CDS:7.2 | 72 | Chr3: 17500099-17500170 | Arabidopsis thaliana |
AT3G47490:CDS:3 | 531 | Chr3: 17498337-17498867 | Arabidopsis thaliana |
Exons
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT3G47490:exon:8 | 406 | Chr3: 17500099-17500504 | Arabidopsis thaliana |
AT3G47490:exon:1 | 687 | Chr3: 17498148-17498834 | Arabidopsis thaliana |
AT3G47490:exon:12 | 337 | Chr3: 17500649-17500985 | Arabidopsis thaliana |
AT3G47490:exon:2 | 640 | Chr3: 17498195-17498834 | Arabidopsis thaliana |
AT3G47490:exon:13 | 358 | Chr3: 17500649-17501006 | Arabidopsis thaliana |
AT3G47490:exon:3 | 556 | Chr3: 17498279-17498834 | Arabidopsis thaliana |
AT3G47490:exon:6 | 60 | Chr3: 17499590-17499649 | Arabidopsis thaliana |
AT3G47490:exon:7 | 39 | Chr3: 17500099-17500137 | Arabidopsis thaliana |
AT3G47490:exon:10 | 85 | Chr3: 17500484-17500568 | Arabidopsis thaliana |
AT3G47490:exon:4 | 526 | Chr3: 17498309-17498834 | Arabidopsis thaliana |
AT3G47490:exon:9 | 470 | Chr3: 17500099-17500568 | Arabidopsis thaliana |
AT3G47490:exon:11 | 332 | Chr3: 17500649-17500980 | Arabidopsis thaliana |
AT3G47490:exon:5 | 1416 | Chr3: 17498337-17499752 | Arabidopsis thaliana |
Five Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT3G47490:five_prime_UTR:1 | 129 | Chr3: 17498148-17498276 | Arabidopsis thaliana |
AT3G47490:five_prime_UTR:2 | 82 | Chr3: 17498195-17498276 | Arabidopsis thaliana |
AT3G47490:five_prime_UTR:3 | 175 | Chr3: 17498279-17498453 | Arabidopsis thaliana |
AT3G47490:five_prime_UTR:4 | 28 | Chr3: 17498309-17498336 | Arabidopsis thaliana |
mRNAs
DB identifier | Length | Chromosome Location |
---|---|---|
AT3G47490.5 | 1093 | Chr3: 17498148-17500504 |
AT3G47490.4 | 1148 | Chr3: 17498148-17500985 |
AT3G47490.6 | 1468 | Chr3: 17498195-17501006 |
AT3G47490.3 | 1072 | Chr3: 17498279-17500980 |
AT3G47490.1 | 982 | Chr3: 17498309-17500980 |
AT3G47490.7 | 1328 | Chr3: 17498309-17500980 |
AT3G47490.2 | 1416 | Chr3: 17498337-17499752 |
Three Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT3G47490:three_prime_UTR:2 | 334 | Chr3: 17500171-17500504 | Arabidopsis thaliana |
AT3G47490:three_prime_UTR:7 | 254 | Chr3: 17500732-17500985 | Arabidopsis thaliana |
AT3G47490:three_prime_UTR:5 | 358 | Chr3: 17500649-17501006 | Arabidopsis thaliana |
AT3G47490:three_prime_UTR:6 | 249 | Chr3: 17500732-17500980 | Arabidopsis thaliana |
AT3G47490:three_prime_UTR:3 | 398 | Chr3: 17500171-17500568 | Arabidopsis thaliana |
AT3G47490:three_prime_UTR:4 | 332 | Chr3: 17500649-17500980 | Arabidopsis thaliana |
AT3G47490:three_prime_UTR:1 | 885 | Chr3: 17498868-17499752 | Arabidopsis thaliana |
Function
Gene Ontology
cellular component | |
---|---|
No terms in this category. | |
molecular function | |
nucleic acid binding | ECO |
zinc ion binding | ECO |
endonuclease activity | ECO |
biological process | |
No terms in this category. |
Expression
Co-expression
Querying ATTED Service...
Data Source: ATTED-II |
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Top N
LS: LS is a monotonic transformation (negative logit) of MR index. Larger LS indicates stronger co-expression.
Waiting for results...