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Gene : AT3G46960 A. thaliana

DB identifier  ? AT3G46960 Secondary Identifier  ? locus:2075566
Brief Description  RNA helicase, ATP-dependent, SK12/DOB1 protein
TAIR Computational Description  RNA helicase, ATP-dependent, SK12/DOB1 protein;(source:Araport11)
TAIR Curator Summary  The gene encodes a DExD⁄H box RNA helicase, involved in the regulation of K+ deprivation stress response.SKI2 encodes the RNA helicase subunit of the SKI complex. Mutation of SKI2 leads to production of secondary siRNAs from miRNA target transcripts
TAIR Short Description  RNA helicase, ATP-dependent, SK12/DOB1 protein
TAIR Aliases  SKI2

0 Gene Rifs

1 Organism

12 Publications

0 Synonyms

Genomics

Genome feature

Region: gene ? Length: 7350  
Location: Chr3:17290873-17298222 reverse strand

Gene models - AT3G46960 AT3G46960

? Gene models

Transcripts: 3  Exons: 68  Introns: 65 

Overlapping Features

? Genome features that overlap coordinates of this Gene

30 Child Features

1 Cross References

0 Downstream Intergenic Region

0 Located Features

1 Upstream Intergenic Region

Proteins

Curated comments from UniProt

Type Comment Proteins
SKI2_ARATH function Component of the SKI complex which is thought to be involved in exosome-mediated RNA decay and associates with transcriptionally active genes in a manner dependent on PAF1 complex (PAF1C) (PubMed:22511887). Involved in the regulation of potassium deprivation stress response (PubMed:21535471).
SKI2_ARATH similarity Belongs to the DExH box helicase family. SKI2 subfamily.
SKI2_ARATH tissue specificity Expressed in vascular tissues of leaves and roots of young plants.

3 Proteins

Function

Interactions

Interaction Network

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Expression

eFP Visualization

Data Source: BAR




Co-expression

Querying ATTED Service...
Data Source: ATTED-II
Top N
LS: LS is a monotonic transformation (negative logit) of MR index. Larger LS indicates stronger co-expression.

 

Homology

Phytozome Homologs

Data Source: Phytozome


0 Homologues

 

Other

7 Data Sets