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Genomics
Overlapping Features
Genome features that overlap coordinates of this Gene
CDSs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT3G46960:CDS:26 | 213 | Chr3: 17291004-17291216 | Arabidopsis thaliana |
AT3G46960:CDS:25 | 127 | Chr3: 17291299-17291425 | Arabidopsis thaliana |
AT3G46960:CDS:24 | 239 | Chr3: 17291518-17291756 | Arabidopsis thaliana |
AT3G46960:CDS:23 | 215 | Chr3: 17291852-17292066 | Arabidopsis thaliana |
AT3G46960:CDS:22 | 454 | Chr3: 17292154-17292607 | Arabidopsis thaliana |
AT3G46960:CDS:21 | 154 | Chr3: 17292678-17292831 | Arabidopsis thaliana |
AT3G46960:CDS:20 | 110 | Chr3: 17293021-17293130 | Arabidopsis thaliana |
AT3G46960:CDS:19 | 258 | Chr3: 17293233-17293490 | Arabidopsis thaliana |
AT3G46960:CDS:18 | 54 | Chr3: 17293655-17293708 | Arabidopsis thaliana |
AT3G46960:CDS:17 | 111 | Chr3: 17293880-17293990 | Arabidopsis thaliana |
AT3G46960:CDS:16 | 156 | Chr3: 17294089-17294244 | Arabidopsis thaliana |
AT3G46960:CDS:15 | 370 | Chr3: 17294347-17294716 | Arabidopsis thaliana |
AT3G46960:CDS:14 | 68 | Chr3: 17294814-17294881 | Arabidopsis thaliana |
AT3G46960:CDS:13 | 111 | Chr3: 17295178-17295288 | Arabidopsis thaliana |
AT3G46960:CDS:12 | 201 | Chr3: 17295423-17295623 | Arabidopsis thaliana |
AT3G46960:CDS:11 | 102 | Chr3: 17295709-17295810 | Arabidopsis thaliana |
AT3G46960:CDS:10 | 108 | Chr3: 17295914-17296021 | Arabidopsis thaliana |
AT3G46960:CDS:9 | 191 | Chr3: 17296097-17296287 | Arabidopsis thaliana |
AT3G46960:CDS:8 | 79 | Chr3: 17296380-17296458 | Arabidopsis thaliana |
AT3G46960:CDS:7 | 69 | Chr3: 17296556-17296624 | Arabidopsis thaliana |
AT3G46960:CDS:4 | 261 | Chr3: 17296726-17296986 | Arabidopsis thaliana |
AT3G46960:CDS:2 | 258 | Chr3: 17297153-17297410 | Arabidopsis thaliana |
AT3G46960:CDS:1 | 135 | Chr3: 17297933-17298067 | Arabidopsis thaliana |
AT3G46960:CDS:26.1 | 213 | Chr3: 17291004-17291216 | Arabidopsis thaliana |
AT3G46960:CDS:25.1 | 127 | Chr3: 17291299-17291425 | Arabidopsis thaliana |
AT3G46960:CDS:24.1 | 239 | Chr3: 17291518-17291756 | Arabidopsis thaliana |
AT3G46960:CDS:23.1 | 215 | Chr3: 17291852-17292066 | Arabidopsis thaliana |
AT3G46960:CDS:22.1 | 454 | Chr3: 17292154-17292607 | Arabidopsis thaliana |
AT3G46960:CDS:21.1 | 154 | Chr3: 17292678-17292831 | Arabidopsis thaliana |
AT3G46960:CDS:20.1 | 110 | Chr3: 17293021-17293130 | Arabidopsis thaliana |
Exons
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT3G46950:exon:1 | 1595 | Chr3: 17289369-17290963 | Arabidopsis thaliana |
AT3G46960:exon:27 | 344 | Chr3: 17290873-17291216 | Arabidopsis thaliana |
AT3G46960:exon:5 | 261 | Chr3: 17296726-17296986 | Arabidopsis thaliana |
AT3G46960:exon:1 | 290 | Chr3: 17297933-17298222 | Arabidopsis thaliana |
AT3G46960:exon:4 | 685 | Chr3: 17296726-17297410 | Arabidopsis thaliana |
AT3G46960:exon:26 | 213 | Chr3: 17291004-17291216 | Arabidopsis thaliana |
AT3G46960:exon:25 | 127 | Chr3: 17291299-17291425 | Arabidopsis thaliana |
AT3G46960:exon:24 | 239 | Chr3: 17291518-17291756 | Arabidopsis thaliana |
AT3G46960:exon:23 | 215 | Chr3: 17291852-17292066 | Arabidopsis thaliana |
AT3G46960:exon:22 | 454 | Chr3: 17292154-17292607 | Arabidopsis thaliana |
AT3G46960:exon:21 | 154 | Chr3: 17292678-17292831 | Arabidopsis thaliana |
AT3G46960:exon:20 | 110 | Chr3: 17293021-17293130 | Arabidopsis thaliana |
AT3G46960:exon:19 | 258 | Chr3: 17293233-17293490 | Arabidopsis thaliana |
AT3G46960:exon:18 | 54 | Chr3: 17293655-17293708 | Arabidopsis thaliana |
AT3G46960:exon:17 | 111 | Chr3: 17293880-17293990 | Arabidopsis thaliana |
AT3G46960:exon:16 | 156 | Chr3: 17294089-17294244 | Arabidopsis thaliana |
AT3G46960:exon:15 | 370 | Chr3: 17294347-17294716 | Arabidopsis thaliana |
AT3G46960:exon:14 | 68 | Chr3: 17294814-17294881 | Arabidopsis thaliana |
AT3G46960:exon:13 | 111 | Chr3: 17295178-17295288 | Arabidopsis thaliana |
AT3G46960:exon:12 | 201 | Chr3: 17295423-17295623 | Arabidopsis thaliana |
AT3G46960:exon:11 | 102 | Chr3: 17295709-17295810 | Arabidopsis thaliana |
AT3G46960:exon:10 | 108 | Chr3: 17295914-17296021 | Arabidopsis thaliana |
AT3G46960:exon:9 | 191 | Chr3: 17296097-17296287 | Arabidopsis thaliana |
AT3G46960:exon:8 | 79 | Chr3: 17296380-17296458 | Arabidopsis thaliana |
AT3G46960:exon:7 | 69 | Chr3: 17296556-17296624 | Arabidopsis thaliana |
AT3G46960:exon:6 | 248 | Chr3: 17296726-17296973 | Arabidopsis thaliana |
AT3G46960:exon:3 | 258 | Chr3: 17297153-17297410 | Arabidopsis thaliana |
AT3G46960:exon:2 | 275 | Chr3: 17297933-17298207 | Arabidopsis thaliana |
Five Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT3G46960:five_prime_UTR:1 | 155 | Chr3: 17298068-17298222 | Arabidopsis thaliana |
AT3G46960:five_prime_UTR:4 | 442 | Chr3: 17296969-17297410 | Arabidopsis thaliana |
AT3G46960:five_prime_UTR:3 | 236 | Chr3: 17297175-17297410 | Arabidopsis thaliana |
AT3G46960:five_prime_UTR:2 | 275 | Chr3: 17297933-17298207 | Arabidopsis thaliana |
Genes
DB identifier | Secondary Identifier | Symbol | Name | Length | Chromosome Location |
Organism . Short Name |
TAIR Computational Description | TAIR Curator Summary | TAIR Short Description | TAIR Aliases |
---|---|---|---|---|---|---|---|---|---|---|
AT3G46950 | locus:2102827 | AT3G46950 | 1595 | Chr3: 17289369-17290963 | A. thaliana | Mitochondrial transcription termination factor family protein;(source:Araport11) | NULL | Mitochondrial transcription termination factor family protein | mTERF33 |
mRNAs
DB identifier | Length | Chromosome Location |
---|---|---|
AT3G46950.1 | 1595 | Chr3: 17289369-17290963 |
AT3G46960.1 | 4330 | Chr3: 17290873-17298222 |
AT3G46960.2 | 4350 | Chr3: 17291004-17298207 |
AT3G46960.3 | 4171 | Chr3: 17291004-17298207 |
Three Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT3G46950:three_prime_UTR:1 | 159 | Chr3: 17290805-17290963 | Arabidopsis thaliana |
AT3G46960:three_prime_UTR:1 | 131 | Chr3: 17290873-17291003 | Arabidopsis thaliana |
Proteins
Curated comments from UniProt
Type | Comment | Proteins |
---|---|---|
SKI2_ARATH | function | Component of the SKI complex which is thought to be involved in exosome-mediated RNA decay and associates with transcriptionally active genes in a manner dependent on PAF1 complex (PAF1C) (PubMed:22511887). Involved in the regulation of potassium deprivation stress response (PubMed:21535471). |
SKI2_ARATH | similarity | Belongs to the DExH box helicase family. SKI2 subfamily. |
SKI2_ARATH | tissue specificity | Expressed in vascular tissues of leaves and roots of young plants. |
Function
Gene Ontology
cellular component | |
---|---|
cytoplasm | ECO |
plant-type vacuole | ECO |
Ski complex | ECO |
molecular function | |
RNA helicase activity | ECO |
RNA binding | ECO |
ATP hydrolysis activity | ECO |
ATP binding | ECO |
biological process | |
nuclear-transcribed mRNA catabolic process, 3'-5' exonucleolytic nonsense-mediated decay | ECO |
positive regulation of wax biosynthetic process | ECO |
potassium ion transport | ECO |
post-transcriptional gene silencing | ECO |
response to potassium ion | ECO |
RNA fragment catabolic process | ECO |
Interactions
Interaction Network
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Expression
Co-expression
Querying ATTED Service...
Data Source: ATTED-II |
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LS: LS is a monotonic transformation (negative logit) of MR index. Larger LS indicates stronger co-expression.
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