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Genomics
Overlapping Features
Genome features that overlap coordinates of this Gene
CDSs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT3G45630:CDS:12 | 590 | Chr3: 16748751-16749340 | Arabidopsis thaliana |
AT3G45630:CDS:11 | 111 | Chr3: 16749427-16749537 | Arabidopsis thaliana |
AT3G45630:CDS:10 | 1355 | Chr3: 16749662-16751016 | Arabidopsis thaliana |
AT3G45630:CDS:9 | 80 | Chr3: 16751098-16751177 | Arabidopsis thaliana |
AT3G45630:CDS:8 | 127 | Chr3: 16751497-16751623 | Arabidopsis thaliana |
AT3G45630:CDS:7 | 92 | Chr3: 16751771-16751862 | Arabidopsis thaliana |
AT3G45630:CDS:6 | 49 | Chr3: 16751987-16752035 | Arabidopsis thaliana |
AT3G45630:CDS:5 | 84 | Chr3: 16752122-16752205 | Arabidopsis thaliana |
AT3G45630:CDS:4 | 110 | Chr3: 16752325-16752434 | Arabidopsis thaliana |
AT3G45630:CDS:3 | 151 | Chr3: 16752525-16752675 | Arabidopsis thaliana |
AT3G45630:CDS:2 | 128 | Chr3: 16752766-16752893 | Arabidopsis thaliana |
AT3G45630:CDS:1 | 93 | Chr3: 16753098-16753190 | Arabidopsis thaliana |
AT3G45630:CDS:12.1 | 590 | Chr3: 16748751-16749340 | Arabidopsis thaliana |
AT3G45630:CDS:11.1 | 111 | Chr3: 16749427-16749537 | Arabidopsis thaliana |
AT3G45630:CDS:10.1 | 1355 | Chr3: 16749662-16751016 | Arabidopsis thaliana |
AT3G45630:CDS:9.1 | 80 | Chr3: 16751098-16751177 | Arabidopsis thaliana |
AT3G45630:CDS:8.1 | 127 | Chr3: 16751497-16751623 | Arabidopsis thaliana |
AT3G45630:CDS:7.1 | 92 | Chr3: 16751771-16751862 | Arabidopsis thaliana |
AT3G45630:CDS:6.1 | 49 | Chr3: 16751987-16752035 | Arabidopsis thaliana |
AT3G45630:CDS:5.1 | 84 | Chr3: 16752122-16752205 | Arabidopsis thaliana |
AT3G45630:CDS:4.1 | 110 | Chr3: 16752325-16752434 | Arabidopsis thaliana |
AT3G45630:CDS:3.1 | 151 | Chr3: 16752525-16752675 | Arabidopsis thaliana |
AT3G45630:CDS:2.1 | 128 | Chr3: 16752766-16752893 | Arabidopsis thaliana |
AT3G45630:CDS:1.1 | 93 | Chr3: 16753098-16753190 | Arabidopsis thaliana |
Exons
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT3G45620:exon:7 | 364 | Chr3: 16747766-16748129 | Arabidopsis thaliana |
AT3G45620:exon:8 | 391 | Chr3: 16747766-16748156 | Arabidopsis thaliana |
AT3G45630:exon:16 | 387 | Chr3: 16748092-16748478 | Arabidopsis thaliana |
AT3G45630:exon:1 | 100 | Chr3: 16753744-16753843 | Arabidopsis thaliana |
AT3G45630:exon:15 | 372 | Chr3: 16748107-16748478 | Arabidopsis thaliana |
AT3G45630:exon:14 | 773 | Chr3: 16748568-16749340 | Arabidopsis thaliana |
AT3G45630:exon:13 | 111 | Chr3: 16749427-16749537 | Arabidopsis thaliana |
AT3G45630:exon:12 | 1355 | Chr3: 16749662-16751016 | Arabidopsis thaliana |
AT3G45630:exon:11 | 80 | Chr3: 16751098-16751177 | Arabidopsis thaliana |
AT3G45630:exon:10 | 127 | Chr3: 16751497-16751623 | Arabidopsis thaliana |
AT3G45630:exon:9 | 92 | Chr3: 16751771-16751862 | Arabidopsis thaliana |
AT3G45630:exon:8 | 49 | Chr3: 16751987-16752035 | Arabidopsis thaliana |
AT3G45630:exon:7 | 84 | Chr3: 16752122-16752205 | Arabidopsis thaliana |
AT3G45630:exon:6 | 110 | Chr3: 16752325-16752434 | Arabidopsis thaliana |
AT3G45630:exon:5 | 151 | Chr3: 16752525-16752675 | Arabidopsis thaliana |
AT3G45630:exon:4 | 128 | Chr3: 16752766-16752893 | Arabidopsis thaliana |
AT3G45630:exon:3 | 100 | Chr3: 16753098-16753197 | Arabidopsis thaliana |
AT3G45630:exon:2 | 226 | Chr3: 16753609-16753834 | Arabidopsis thaliana |
Five Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT3G45630:five_prime_UTR:1 | 100 | Chr3: 16753744-16753843 | Arabidopsis thaliana |
AT3G45630:five_prime_UTR:3 | 7 | Chr3: 16753191-16753197 | Arabidopsis thaliana |
AT3G45630:five_prime_UTR:2 | 226 | Chr3: 16753609-16753834 | Arabidopsis thaliana |
Genes
DB identifier | Secondary Identifier | Symbol | Name | Length | Chromosome Location |
Organism . Short Name |
TAIR Computational Description | TAIR Curator Summary | TAIR Short Description | TAIR Aliases |
---|---|---|---|---|---|---|---|---|---|---|
AT3G45620 | locus:2085602 | AT3G45620 | 2284 | Chr3: 16745873-16748156 | A. thaliana | Transducin/WD40 repeat-like superfamily protein;(source:Araport11) | This gene is predicted to encode a protein with a DWD motif. It can bind to DDB1a in Y2H assays, and DDB1b in co-IP assays, and may be involved in the formation of a CUL4-based E3 ubiquitin ligase | Transducin/WD40 repeat-like superfamily protein |
mRNAs
DB identifier | Length | Chromosome Location |
---|---|---|
AT3G45620.1 | 1627 | Chr3: 16745873-16748129 |
AT3G45620.2 | 1747 | Chr3: 16745882-16748156 |
AT3G45630.1 | 3647 | Chr3: 16748092-16753843 |
AT3G45630.2 | 3758 | Chr3: 16748107-16753834 |
Three Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT3G45620:three_prime_UTR:1 | 136 | Chr3: 16747994-16748129 | Arabidopsis thaliana |
AT3G45620:three_prime_UTR:2 | 163 | Chr3: 16747994-16748156 | Arabidopsis thaliana |
AT3G45630:three_prime_UTR:3 | 387 | Chr3: 16748092-16748478 | Arabidopsis thaliana |
AT3G45630:three_prime_UTR:2 | 372 | Chr3: 16748107-16748478 | Arabidopsis thaliana |
AT3G45630:three_prime_UTR:1 | 183 | Chr3: 16748568-16748750 | Arabidopsis thaliana |
Function
Gene Ontology
cellular component | |
---|---|
CCR4-NOT complex | ECO |
molecular function | |
ubiquitin-protein transferase activity | ECO |
RNA binding | ECO |
biological process | |
No terms in this category. |
Interactions
Interaction Network
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Expression
Co-expression
Querying ATTED Service...
Data Source: ATTED-II |
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Top N
LS: LS is a monotonic transformation (negative logit) of MR index. Larger LS indicates stronger co-expression.
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