External Links
- Aracyc
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- Plant Proteome Database
- SUBA
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- GeneVisible
- ABRC
- TAIR
- EnsemblPlants
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- Agrisera Antibodies
- ATTED-II
- T-DNA Express
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Genomics
Overlapping Features
Genome features that overlap coordinates of this Gene
CDSs: 32, Exons: 15, Five Prime UTRs: 2, Gene: 1, mRNAs: 8, Three Prime UTRs: 5, Transposable Element: 1, Transposon Fragment: 1
CDSs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT3G43920:CDS:29 | 205 | Chr3: 15760626-15760830 | Arabidopsis thaliana |
AT3G43920:CDS:29.1 | 205 | Chr3: 15760626-15760830 | Arabidopsis thaliana |
AT3G43920:CDS:29.2 | 205 | Chr3: 15760626-15760830 | Arabidopsis thaliana |
AT3G43920:CDS:29.3 | 205 | Chr3: 15760626-15760830 | Arabidopsis thaliana |
AT3G43920:CDS:29.4 | 205 | Chr3: 15760626-15760830 | Arabidopsis thaliana |
AT3G43930:CDS:13 | 210 | Chr3: 15760948-15761157 | Arabidopsis thaliana |
AT3G43930:CDS:11 | 154 | Chr3: 15761241-15761394 | Arabidopsis thaliana |
AT3G43930:CDS:10 | 206 | Chr3: 15761491-15761696 | Arabidopsis thaliana |
AT3G43930:CDS:7 | 90 | Chr3: 15761779-15761868 | Arabidopsis thaliana |
AT3G43930:CDS:6 | 108 | Chr3: 15761933-15762040 | Arabidopsis thaliana |
AT3G43930:CDS:5 | 132 | Chr3: 15762125-15762256 | Arabidopsis thaliana |
AT3G43930:CDS:4 | 206 | Chr3: 15762336-15762541 | Arabidopsis thaliana |
AT3G43930:CDS:3 | 103 | Chr3: 15762615-15762717 | Arabidopsis thaliana |
AT3G43930:CDS:2 | 92 | Chr3: 15762820-15762911 | Arabidopsis thaliana |
AT3G43930:CDS:1 | 208 | Chr3: 15763056-15763263 | Arabidopsis thaliana |
AT3G43930:CDS:9 | 16 | Chr3: 15761681-15761696 | Arabidopsis thaliana |
AT3G43930:CDS:8 | 77 | Chr3: 15761779-15761855 | Arabidopsis thaliana |
AT3G43930:CDS:6.1 | 108 | Chr3: 15761933-15762040 | Arabidopsis thaliana |
AT3G43930:CDS:5.1 | 132 | Chr3: 15762125-15762256 | Arabidopsis thaliana |
AT3G43930:CDS:4.1 | 206 | Chr3: 15762336-15762541 | Arabidopsis thaliana |
AT3G43930:CDS:3.1 | 103 | Chr3: 15762615-15762717 | Arabidopsis thaliana |
AT3G43930:CDS:2.1 | 92 | Chr3: 15762820-15762911 | Arabidopsis thaliana |
AT3G43930:CDS:1.1 | 208 | Chr3: 15763056-15763263 | Arabidopsis thaliana |
AT3G43930:CDS:12 | 190 | Chr3: 15761205-15761394 | Arabidopsis thaliana |
AT3G43930:CDS:10.1 | 206 | Chr3: 15761491-15761696 | Arabidopsis thaliana |
AT3G43930:CDS:7.1 | 90 | Chr3: 15761779-15761868 | Arabidopsis thaliana |
AT3G43930:CDS:6.2 | 108 | Chr3: 15761933-15762040 | Arabidopsis thaliana |
AT3G43930:CDS:5.2 | 132 | Chr3: 15762125-15762256 | Arabidopsis thaliana |
AT3G43930:CDS:4.2 | 206 | Chr3: 15762336-15762541 | Arabidopsis thaliana |
AT3G43930:CDS:3.2 | 103 | Chr3: 15762615-15762717 | Arabidopsis thaliana |
Exons
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT3G43920:exon:32 | 234 | Chr3: 15760626-15760859 | Arabidopsis thaliana |
AT3G43920:exon:31 | 205 | Chr3: 15760626-15760830 | Arabidopsis thaliana |
AT3G43930:exon:13 | 341 | Chr3: 15760817-15761157 | Arabidopsis thaliana |
AT3G43930:exon:11 | 154 | Chr3: 15761241-15761394 | Arabidopsis thaliana |
AT3G43930:exon:9 | 77 | Chr3: 15761779-15761855 | Arabidopsis thaliana |
AT3G43930:exon:2 | 275 | Chr3: 15763056-15763330 | Arabidopsis thaliana |
AT3G43930:exon:12 | 498 | Chr3: 15760897-15761394 | Arabidopsis thaliana |
AT3G43930:exon:10 | 206 | Chr3: 15761491-15761696 | Arabidopsis thaliana |
AT3G43930:exon:8 | 90 | Chr3: 15761779-15761868 | Arabidopsis thaliana |
AT3G43930:exon:7 | 108 | Chr3: 15761933-15762040 | Arabidopsis thaliana |
AT3G43930:exon:6 | 132 | Chr3: 15762125-15762256 | Arabidopsis thaliana |
AT3G43930:exon:5 | 206 | Chr3: 15762336-15762541 | Arabidopsis thaliana |
AT3G43930:exon:4 | 103 | Chr3: 15762615-15762717 | Arabidopsis thaliana |
AT3G43930:exon:3 | 92 | Chr3: 15762820-15762911 | Arabidopsis thaliana |
AT3G43930:exon:1 | 351 | Chr3: 15763056-15763406 | Arabidopsis thaliana |
Five Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT3G43930:five_prime_UTR:2 | 67 | Chr3: 15763264-15763330 | Arabidopsis thaliana |
AT3G43930:five_prime_UTR:1 | 143 | Chr3: 15763264-15763406 | Arabidopsis thaliana |
Genes
DB identifier | Secondary Identifier | Symbol | Name | Length | Chromosome Location |
Organism . Short Name |
TAIR Computational Description | TAIR Curator Summary | TAIR Short Description | TAIR Aliases |
---|---|---|---|---|---|---|---|---|---|---|
AT3G43920 | locus:2097139 | DCL3 | dicer-like 3 | 7473 | Chr3: 15753387-15760859 | A. thaliana | dicer-like 3;(source:Araport11) | Encodes a ribonuclease III family protein that is required for endogenous RDR2-dependent siRNA (but not miRNA) formation. | dicer-like 3 | ATDCL3, DCL3 |
mRNAs
DB identifier | Length | Chromosome Location |
---|---|---|
AT3G43920.4 | 4871 | Chr3: 15753387-15760830 |
AT3G43920.3 | 4890 | Chr3: 15753400-15760859 |
AT3G43920.1 | 4596 | Chr3: 15753548-15760830 |
AT3G43920.2 | 4743 | Chr3: 15753548-15760830 |
AT3G43920.6 | 4244 | Chr3: 15754870-15760830 |
AT3G43930.1 | 1707 | Chr3: 15760817-15763330 |
AT3G43930.3 | 1697 | Chr3: 15760897-15763330 |
AT3G43930.2 | 1786 | Chr3: 15760897-15763406 |
Three Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT3G43920:three_prime_UTR:1 | 29 | Chr3: 15760831-15760859 | Arabidopsis thaliana |
AT3G43930:three_prime_UTR:4 | 131 | Chr3: 15760817-15760947 | Arabidopsis thaliana |
AT3G43930:three_prime_UTR:2 | 498 | Chr3: 15760897-15761394 | Arabidopsis thaliana |
AT3G43930:three_prime_UTR:1 | 190 | Chr3: 15761491-15761680 | Arabidopsis thaliana |
AT3G43930:three_prime_UTR:3 | 308 | Chr3: 15760897-15761204 | Arabidopsis thaliana |
Transposable Elements
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT3TE63720 | 97 | Chr3: 15763318-15763414 | Arabidopsis thaliana |
Transposon Fragments
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT3TE63720:transposon_fragment:1 | 97 | Chr3: 15763318-15763414 | Arabidopsis thaliana |
Function
Gene Ontology
cellular component | |
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No terms in this category. | |
molecular function | |
No terms in this category. | |
biological process | |
No terms in this category. |
Expression
Co-expression
Querying ATTED Service...
Data Source: ATTED-II |
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Top N
LS: LS is a monotonic transformation (negative logit) of MR index. Larger LS indicates stronger co-expression.
Waiting for results...