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Gene : CHR38 A. thaliana

DB identifier  ? AT3G42670 Secondary Identifier  ? locus:2096499
Name  ? chromatin remodeling 38 Brief Description  chromatin remodeling 38
TAIR Computational Description  chromatin remodeling 38;(source:Araport11)
TAIR Curator Summary  Encodes a nuclear localized SNF domain containing protein involved in RNA silencing. Mutants were identified in a screen for defects in the spread of RNA silencing. CLSY1 may affect production of dsRNA from the locus to be silenced. Locus-specific regulator of 24nt-siRNA expression, works together with CLSY2-4 as the master regulators of essentially all Pol-IV-dependent 24nt-siRNAs.
TAIR Short Description  chromatin remodeling 38
TAIR Aliases  CHR38, CLSY, CLSY1

2 Gene Rifs

1 Organism

14 Publications

0 Synonyms

Genomics

Genome feature

Region: gene ? Length: 4832  
Location: Chr3:14755798-14760629 reverse strand

Gene models - CHR38 AT3G42670

? Gene models

Transcripts: 4  Exons: 22  Introns: 18 

Overlapping Features

? Genome features that overlap coordinates of this Gene

13 Child Features

1 Cross References

1 Downstream Intergenic Region

0 Located Features

1 Upstream Intergenic Region

Proteins

Curated comments from UniProt

Type Comment Proteins
CLSY1_ARATH function Probable chromatin remodeling factor. Required for the initial establishment of DNA methylation and for accumulation of 24-nt siRNAs. May act on RNA templates by remodeling ribonucleoprotein structures and thereby influencing the availability of the RNA to polymerases.
CLSY1_ARATH similarity Belongs to the helicase family.
CLSY1_ARATH subcellular location In the nucleolus, localized in a ring around the inner periphery.

2 Proteins

Function

Interactions

Interaction Network

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Expression

eFP Visualization

Data Source: BAR




Co-expression

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Data Source: ATTED-II
Top N
LS: LS is a monotonic transformation (negative logit) of MR index. Larger LS indicates stronger co-expression.

 

Homology

Phytozome Homologs

Data Source: Phytozome


0 Homologues

 

Other

8 Data Sets