External Links
- Aracyc
- AceView
- Plant Proteome Database
- SUBA
- Gramene
- GeneVisible
- ABRC
- TAIR
- EnsemblPlants
- PGDD
- AtcisDB
- Plaza
- pep2pro
- NCBI-Entrez
- PIR
- AtGDB
- Agrisera Antibodies
- ATTED-II
- T-DNA Express
- AtGenExpress
- AthaMap
- Phytozome
Genomics
Overlapping Features
Genome features that overlap coordinates of this Gene
CDSs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT3G33530:CDS:1 | 965 | Chr3: 14085354-14086318 | Arabidopsis thaliana |
AT3G33530:CDS:2 | 460 | Chr3: 14086729-14087188 | Arabidopsis thaliana |
AT3G33530:CDS:6 | 88 | Chr3: 14087380-14087467 | Arabidopsis thaliana |
AT3G33530:CDS:7 | 182 | Chr3: 14087556-14087737 | Arabidopsis thaliana |
AT3G33530:CDS:8 | 137 | Chr3: 14087930-14088066 | Arabidopsis thaliana |
AT3G33530:CDS:10 | 67 | Chr3: 14088368-14088434 | Arabidopsis thaliana |
AT3G33530:CDS:11 | 130 | Chr3: 14089089-14089218 | Arabidopsis thaliana |
AT3G33530:CDS:13 | 115 | Chr3: 14089315-14089429 | Arabidopsis thaliana |
AT3G33530:CDS:14 | 76 | Chr3: 14089871-14089946 | Arabidopsis thaliana |
AT3G33530:CDS:15 | 183 | Chr3: 14090019-14090201 | Arabidopsis thaliana |
AT3G33530:CDS:17 | 161 | Chr3: 14090392-14090552 | Arabidopsis thaliana |
AT3G33530:CDS:18 | 106 | Chr3: 14090909-14091014 | Arabidopsis thaliana |
AT3G33530:CDS:19 | 205 | Chr3: 14091203-14091407 | Arabidopsis thaliana |
AT3G33530:CDS:20 | 287 | Chr3: 14091504-14091790 | Arabidopsis thaliana |
AT3G33530:CDS:21 | 122 | Chr3: 14092020-14092141 | Arabidopsis thaliana |
AT3G33530:CDS:22 | 145 | Chr3: 14092323-14092467 | Arabidopsis thaliana |
AT3G33530:CDS:23 | 93 | Chr3: 14092546-14092638 | Arabidopsis thaliana |
AT3G33530:CDS:24 | 74 | Chr3: 14092803-14092876 | Arabidopsis thaliana |
AT3G33530:CDS:26 | 91 | Chr3: 14092972-14093062 | Arabidopsis thaliana |
AT3G33530:CDS:1.1 | 965 | Chr3: 14085354-14086318 | Arabidopsis thaliana |
AT3G33530:CDS:2.1 | 460 | Chr3: 14086729-14087188 | Arabidopsis thaliana |
AT3G33530:CDS:6.1 | 88 | Chr3: 14087380-14087467 | Arabidopsis thaliana |
AT3G33530:CDS:7.1 | 182 | Chr3: 14087556-14087737 | Arabidopsis thaliana |
AT3G33530:CDS:8.1 | 137 | Chr3: 14087930-14088066 | Arabidopsis thaliana |
AT3G33530:CDS:10.1 | 67 | Chr3: 14088368-14088434 | Arabidopsis thaliana |
AT3G33530:CDS:11.1 | 130 | Chr3: 14089089-14089218 | Arabidopsis thaliana |
AT3G33530:CDS:13.1 | 115 | Chr3: 14089315-14089429 | Arabidopsis thaliana |
AT3G33530:CDS:14.1 | 76 | Chr3: 14089871-14089946 | Arabidopsis thaliana |
AT3G33530:CDS:15.1 | 183 | Chr3: 14090019-14090201 | Arabidopsis thaliana |
AT3G33530:CDS:17.1 | 161 | Chr3: 14090392-14090552 | Arabidopsis thaliana |
Exons
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT3G33530:exon:28 | 121 | Chr3: 14092972-14093092 | Arabidopsis thaliana |
AT3G33530:exon:1 | 1071 | Chr3: 14085248-14086318 | Arabidopsis thaliana |
AT3G33530:exon:8 | 88 | Chr3: 14087380-14087467 | Arabidopsis thaliana |
AT3G33530:exon:30 | 497 | Chr3: 14093140-14093636 | Arabidopsis thaliana |
AT3G33530:exon:2 | 1021 | Chr3: 14085298-14086318 | Arabidopsis thaliana |
AT3G33530:exon:15 | 115 | Chr3: 14089315-14089429 | Arabidopsis thaliana |
AT3G33530:exon:18 | 261 | Chr3: 14090019-14090279 | Arabidopsis thaliana |
AT3G33530:exon:31 | 513 | Chr3: 14093140-14093652 | Arabidopsis thaliana |
AT3G33530:exon:4 | 460 | Chr3: 14086729-14087188 | Arabidopsis thaliana |
AT3G33530:exon:6 | 17 | Chr3: 14087259-14087275 | Arabidopsis thaliana |
AT3G33530:exon:11 | 45 | Chr3: 14088238-14088282 | Arabidopsis thaliana |
AT3G33530:exon:29 | 387 | Chr3: 14093140-14093526 | Arabidopsis thaliana |
AT3G33530:exon:3 | 965 | Chr3: 14085354-14086318 | Arabidopsis thaliana |
AT3G33530:exon:5 | 483 | Chr3: 14086729-14087211 | Arabidopsis thaliana |
AT3G33530:exon:7 | 119 | Chr3: 14087349-14087467 | Arabidopsis thaliana |
AT3G33530:exon:9 | 182 | Chr3: 14087556-14087737 | Arabidopsis thaliana |
AT3G33530:exon:10 | 137 | Chr3: 14087930-14088066 | Arabidopsis thaliana |
AT3G33530:exon:12 | 67 | Chr3: 14088368-14088434 | Arabidopsis thaliana |
AT3G33530:exon:13 | 130 | Chr3: 14089089-14089218 | Arabidopsis thaliana |
AT3G33530:exon:14 | 139 | Chr3: 14089291-14089429 | Arabidopsis thaliana |
AT3G33530:exon:16 | 76 | Chr3: 14089871-14089946 | Arabidopsis thaliana |
AT3G33530:exon:17 | 183 | Chr3: 14090019-14090201 | Arabidopsis thaliana |
AT3G33530:exon:19 | 161 | Chr3: 14090392-14090552 | Arabidopsis thaliana |
AT3G33530:exon:20 | 106 | Chr3: 14090909-14091014 | Arabidopsis thaliana |
AT3G33530:exon:21 | 205 | Chr3: 14091203-14091407 | Arabidopsis thaliana |
AT3G33530:exon:22 | 287 | Chr3: 14091504-14091790 | Arabidopsis thaliana |
AT3G33530:exon:23 | 122 | Chr3: 14092020-14092141 | Arabidopsis thaliana |
AT3G33530:exon:24 | 145 | Chr3: 14092323-14092467 | Arabidopsis thaliana |
AT3G33530:exon:25 | 93 | Chr3: 14092546-14092638 | Arabidopsis thaliana |
AT3G33530:exon:26 | 74 | Chr3: 14092803-14092876 | Arabidopsis thaliana |
Five Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT3G33530:five_prime_UTR:1 | 106 | Chr3: 14085248-14085353 | Arabidopsis thaliana |
AT3G33530:five_prime_UTR:2 | 56 | Chr3: 14085298-14085353 | Arabidopsis thaliana |
Genes
DB identifier | Secondary Identifier | Symbol | Name | Length | Chromosome Location |
Organism . Short Name |
TAIR Computational Description | TAIR Curator Summary | TAIR Short Description | TAIR Aliases |
---|---|---|---|---|---|---|---|---|---|---|
AT3G33520 | locus:2102202 | ARP6 | actin-related protein 6 | 1933 | Chr3: 14093656-14095588 | A. thaliana | actin-related protein 6;(source:Araport11) | Encodes ACTIN-RELATED PROTEIN6 (ARP6), a putative component of a chromatin-remodeling complex. Required for both histone acetylation and methylation of the FLC chromatin in Arabidopsis. Along with PIE1 forms a complex to deposit modified histone H2A.Z at several loci within the genome. This modification alters the expression of the target genes (i.e. FLC, MAF4, MAF6). Incorporation of this variant histone into chromatin mediates the ambient temperature response. Located at specific regions of the nuclear periphery. Expression throughout plants shown by in-situ and immunolocalization methods. Mutants show defects in fertility, leaf, flower and inflorescence development and shorter flowering times. ARP6 also is involved in globally controlling developmental responses to ambient temperature through incorporation of variant histone H2A.Z into chromatin. | actin-related protein 6 | ARP6, ATARP6, ESD1, SUF3 |
mRNAs
DB identifier | Length | Chromosome Location |
---|---|---|
AT3G33530.5 | 3823 | Chr3: 14085248-14093092 |
AT3G33530.4 | 4253 | Chr3: 14085248-14093636 |
AT3G33530.3 | 4390 | Chr3: 14085298-14093652 |
AT3G33530.2 | 4154 | Chr3: 14085354-14093526 |
AT3G33530.1 | 4259 | Chr3: 14085354-14093670 |
AT3G33520.1 | 1513 | Chr3: 14093656-14095588 |
Three Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT3G33530:three_prime_UTR:1 | 30 | Chr3: 14093063-14093092 | Arabidopsis thaliana |
AT3G33530:three_prime_UTR:3 | 187 | Chr3: 14093450-14093636 | Arabidopsis thaliana |
AT3G33530:three_prime_UTR:4 | 203 | Chr3: 14093450-14093652 | Arabidopsis thaliana |
AT3G33530:three_prime_UTR:2 | 77 | Chr3: 14093450-14093526 | Arabidopsis thaliana |
AT3G33530:three_prime_UTR:5 | 221 | Chr3: 14093450-14093670 | Arabidopsis thaliana |
AT3G33520:three_prime_UTR:1 | 135 | Chr3: 14093656-14093790 | Arabidopsis thaliana |
Function
Gene Ontology
cellular component | |
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No terms in this category. | |
molecular function | |
No terms in this category. | |
biological process | |
No terms in this category. |
Expression
Co-expression
Querying ATTED Service...
Data Source: ATTED-II |
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Top N
LS: LS is a monotonic transformation (negative logit) of MR index. Larger LS indicates stronger co-expression.
Waiting for results...