External Links
- Aracyc
- AceView
- Plant Proteome Database
- SUBA
- Gramene
- GeneVisible
- ABRC
- TAIR
- EnsemblPlants
- PGDD
- AtcisDB
- Plaza
- pep2pro
- NCBI-Entrez
- PIR
- AtGDB
- Agrisera Antibodies
- ATTED-II
- T-DNA Express
- AtGenExpress
- AthaMap
- Phytozome
Genomics
Overlapping Features
Genome features that overlap coordinates of this Gene
CDSs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT3G29280:CDS:7 | 68 | Chr3: 11236705-11236772 | Arabidopsis thaliana |
AT3G29280:CDS:5 | 179 | Chr3: 11236864-11237042 | Arabidopsis thaliana |
AT3G29280:CDS:4 | 80 | Chr3: 11237156-11237235 | Arabidopsis thaliana |
AT3G29280:CDS:3 | 74 | Chr3: 11237329-11237402 | Arabidopsis thaliana |
AT3G29280:CDS:2 | 159 | Chr3: 11237705-11237863 | Arabidopsis thaliana |
AT3G29280:CDS:1 | 4 | Chr3: 11237944-11237947 | Arabidopsis thaliana |
AT3G29280:CDS:7.1 | 68 | Chr3: 11236705-11236772 | Arabidopsis thaliana |
AT3G29280:CDS:6 | 152 | Chr3: 11236864-11237015 | Arabidopsis thaliana |
AT3G29280:CDS:4.1 | 80 | Chr3: 11237156-11237235 | Arabidopsis thaliana |
AT3G29280:CDS:3.1 | 74 | Chr3: 11237329-11237402 | Arabidopsis thaliana |
AT3G29280:CDS:2.1 | 159 | Chr3: 11237705-11237863 | Arabidopsis thaliana |
AT3G29280:CDS:1.1 | 4 | Chr3: 11237944-11237947 | Arabidopsis thaliana |
Exons
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT3G29280:exon:9 | 197 | Chr3: 11236576-11236772 | Arabidopsis thaliana |
AT3G29280:exon:6 | 179 | Chr3: 11236864-11237042 | Arabidopsis thaliana |
AT3G29280:exon:2 | 53 | Chr3: 11237944-11237996 | Arabidopsis thaliana |
AT3G29280:exon:8 | 192 | Chr3: 11236581-11236772 | Arabidopsis thaliana |
AT3G29280:exon:7 | 152 | Chr3: 11236864-11237015 | Arabidopsis thaliana |
AT3G29280:exon:5 | 80 | Chr3: 11237156-11237235 | Arabidopsis thaliana |
AT3G29280:exon:4 | 74 | Chr3: 11237329-11237402 | Arabidopsis thaliana |
AT3G29280:exon:3 | 159 | Chr3: 11237705-11237863 | Arabidopsis thaliana |
AT3G29280:exon:1 | 100 | Chr3: 11237944-11238043 | Arabidopsis thaliana |
AT3G29290:exon:2 | 1862 | Chr3: 11238011-11239872 | Arabidopsis thaliana |
AT3G29290:exon:1 | 191 | Chr3: 11238011-11238201 | Arabidopsis thaliana |
Five Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT3G29280:five_prime_UTR:2 | 49 | Chr3: 11237948-11237996 | Arabidopsis thaliana |
AT3G29280:five_prime_UTR:1 | 96 | Chr3: 11237948-11238043 | Arabidopsis thaliana |
AT3G29290:five_prime_UTR:2 | 410 | Chr3: 11238011-11238420 | Arabidopsis thaliana |
AT3G29290:five_prime_UTR:1 | 191 | Chr3: 11238011-11238201 | Arabidopsis thaliana |
Genes
DB identifier | Secondary Identifier | Symbol | Name | Length | Chromosome Location |
Organism . Short Name |
TAIR Computational Description | TAIR Curator Summary | TAIR Short Description | TAIR Aliases |
---|---|---|---|---|---|---|---|---|---|---|
AT3G29290 | locus:2091286 | emb2076 | embryo defective 2076 | 2636 | Chr3: 11238011-11240646 | A. thaliana | Pentatricopeptide repeat (PPR) superfamily protein;(source:Araport11) | NULL | Pentatricopeptide repeat (PPR) superfamily protein | emb2076 |
mRNAs
DB identifier | Length | Chromosome Location |
---|---|---|
AT3G29280.2 | 742 | Chr3: 11236576-11237996 |
AT3G29280.1 | 757 | Chr3: 11236581-11238043 |
AT3G29290.1 | 2533 | Chr3: 11238011-11240625 |
AT3G29290.2 | 2446 | Chr3: 11238011-11240625 |
AT3G29290.3 | 2427 | Chr3: 11238011-11240625 |
Three Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT3G29280:three_prime_UTR:2 | 129 | Chr3: 11236576-11236704 | Arabidopsis thaliana |
AT3G29280:three_prime_UTR:1 | 124 | Chr3: 11236581-11236704 | Arabidopsis thaliana |
Function
Gene Ontology
cellular component | |
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No terms in this category. | |
molecular function | |
No terms in this category. | |
biological process | |
No terms in this category. |
Expression
Co-expression
Querying ATTED Service...
Data Source: ATTED-II |
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Top N
LS: LS is a monotonic transformation (negative logit) of MR index. Larger LS indicates stronger co-expression.
Waiting for results...