External Links
- Aracyc
- AceView
- Plant Proteome Database
- SUBA
- Gramene
- GeneVisible
- ABRC
- TAIR
- EnsemblPlants
- PGDD
- AtcisDB
- Plaza
- pep2pro
- NCBI-Entrez
- PIR
- AtGDB
- Agrisera Antibodies
- ATTED-II
- T-DNA Express
- AtGenExpress
- AthaMap
- Phytozome
Genomics
Overlapping Features
Genome features that overlap coordinates of this Gene
Antisense lncRNAs: 4, CDSs: 4, Exons: 19, Gene: 1, mRNA: 1, Transposable Elements: 3, Transposon Fragments: 6
Antisense lncRNAs
DB identifier | Length | Chromosome Location |
---|---|---|
AT3G27990.1 | 4107 | Chr3: 10392571-10398221 |
AT3G27990.2 | 5069 | Chr3: 10392571-10398221 |
AT3G27990.3 | 4254 | Chr3: 10392601-10398235 |
AT3G27990.4 | 1527 | Chr3: 10392675-10398175 |
CDSs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT3G27980:CDS:1 | 303 | Chr3: 10393904-10394206 | Arabidopsis thaliana |
AT3G27980:CDS:2 | 252 | Chr3: 10394247-10394498 | Arabidopsis thaliana |
AT3G27980:CDS:3 | 253 | Chr3: 10394816-10395068 | Arabidopsis thaliana |
AT3G27980:CDS:4 | 686 | Chr3: 10395176-10395861 | Arabidopsis thaliana |
Exons
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT3G27990:exon:11 | 2706 | Chr3: 10393013-10395718 | Arabidopsis thaliana |
AT3G27990:exon:15 | 354 | Chr3: 10392571-10392924 | Arabidopsis thaliana |
AT3G27990:exon:10 | 3724 | Chr3: 10393013-10396736 | Arabidopsis thaliana |
AT3G27990:exon:2 | 450 | Chr3: 10397772-10398221 | Arabidopsis thaliana |
AT3G27990:exon:14 | 324 | Chr3: 10392601-10392924 | Arabidopsis thaliana |
AT3G27990:exon:9 | 2737 | Chr3: 10394000-10396736 | Arabidopsis thaliana |
AT3G27990:exon:4 | 78 | Chr3: 10397606-10397683 | Arabidopsis thaliana |
AT3G27990:exon:1 | 464 | Chr3: 10397772-10398235 | Arabidopsis thaliana |
AT3G27990:exon:13 | 250 | Chr3: 10392675-10392924 | Arabidopsis thaliana |
AT3G27990:exon:12 | 188 | Chr3: 10393013-10393200 | Arabidopsis thaliana |
AT3G27990:exon:8 | 56 | Chr3: 10396681-10396736 | Arabidopsis thaliana |
AT3G27990:exon:7 | 48 | Chr3: 10396841-10396888 | Arabidopsis thaliana |
AT3G27990:exon:6 | 89 | Chr3: 10396982-10397070 | Arabidopsis thaliana |
AT3G27990:exon:5 | 326 | Chr3: 10397173-10397498 | Arabidopsis thaliana |
AT3G27990:exon:3 | 570 | Chr3: 10397606-10398175 | Arabidopsis thaliana |
AT3G27980:exon:1 | 303 | Chr3: 10393904-10394206 | Arabidopsis thaliana |
AT3G27980:exon:2 | 252 | Chr3: 10394247-10394498 | Arabidopsis thaliana |
AT3G27980:exon:3 | 253 | Chr3: 10394816-10395068 | Arabidopsis thaliana |
AT3G27980:exon:4 | 686 | Chr3: 10395176-10395861 | Arabidopsis thaliana |
Genes
DB identifier | Secondary Identifier | Symbol | Name | Length | Chromosome Location |
Organism . Short Name |
TAIR Computational Description | TAIR Curator Summary | TAIR Short Description | TAIR Aliases |
---|---|---|---|---|---|---|---|---|---|---|
AT3G27980 | locus:2086854 | AT3G27980 | 1958 | Chr3: 10393904-10395861 | A. thaliana | Plant invertase/pectin methylesterase inhibitor superfamily;(source:Araport11) | Type II pectin methylesterase; involved in beneficial bacterial recruitment, plant-pathogen interaction. | Plant invertase/pectin methylesterase inhibitor superfamily | PME30 |
Transposable Elements
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT3TE43170 | 94 | Chr3: 10395927-10396020 | Arabidopsis thaliana |
AT3TE43175 | 1594 | Chr3: 10396327-10397920 | Arabidopsis thaliana |
AT3TE43180 | 345 | Chr3: 10398064-10398408 | Arabidopsis thaliana |
Transposon Fragments
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT3TE43170:transposon_fragment:1 | 94 | Chr3: 10395927-10396020 | Arabidopsis thaliana |
AT3TE43175:transposon_fragment:1 | 237 | Chr3: 10396327-10396563 | Arabidopsis thaliana |
AT3TE43175:transposon_fragment:2 | 288 | Chr3: 10396633-10396920 | Arabidopsis thaliana |
AT3TE43175:transposon_fragment:3 | 194 | Chr3: 10397727-10397920 | Arabidopsis thaliana |
AT3TE43180:transposon_fragment:1 | 152 | Chr3: 10398064-10398215 | Arabidopsis thaliana |
AT3TE43180:transposon_fragment:2 | 193 | Chr3: 10398216-10398408 | Arabidopsis thaliana |
Function
Gene Ontology
cellular component | |
---|---|
No terms in this category. | |
molecular function | |
No terms in this category. | |
biological process | |
No terms in this category. |
Interactions
Interaction Network
Show the following interaction types:
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Expression
Co-expression
Querying ATTED Service...
Data Source: ATTED-II |
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Top N
LS: LS is a monotonic transformation (negative logit) of MR index. Larger LS indicates stronger co-expression.
Waiting for results...