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Gene : AT3G27980 A. thaliana

DB identifier  ? AT3G27980 Secondary Identifier  ? locus:2086854
Brief Description  Plant invertase/pectin methylesterase inhibitor superfamily
TAIR Computational Description  Plant invertase/pectin methylesterase inhibitor superfamily;(source:Araport11)
TAIR Curator Summary  Type II pectin methylesterase; involved in beneficial bacterial recruitment, plant-pathogen interaction.
TAIR Short Description  Plant invertase/pectin methylesterase inhibitor superfamily
TAIR Aliases  PME30

0 Gene Rifs

1 Organism

9 Publications

0 Synonyms

Genomics

Genome feature

Region: gene ? Length: 1958  
Location: Chr3:10393904-10395861

Gene models - AT3G27980 AT3G27980

? Gene models

Transcripts: 1  Exons: 4  Introns: 3 

Overlapping Features

? Genome features that overlap coordinates of this Gene

Antisense lncRNAs: 4, CDSs: 4, Exons: 7, Gene: 1, mRNA: 1

5 Child Features

1 Cross References

0 Downstream Intergenic Region

0 Located Features

0 Upstream Intergenic Region

Proteins

Curated comments from UniProt

Type Comment Proteins
PME30_ARATH developmental stage Expressed during late developmental phases of siliques.
PME30_ARATH function Acts in the modification of cell walls via demethylesterification of cell wall pectin.
PME30_ARATH pathway Glycan metabolism; pectin degradation; 2-dehydro-3-deoxy-D-gluconate from pectin: step 1/5.
PME30_ARATH similarity Belongs to the pectinesterase family.
PME30_ARATH tissue specificity Expressed in siliques.

1 Proteins

Function

Gene Ontology

cellular component
extracellular region  ? ECO  
molecular function
enzyme inhibitor activity  ? ECO  
pectinesterase activity  ? ECO  
biological process
pectin catabolic process  ? ECO  
cell wall modification  ? ECO  

Interactions

Interaction Network

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Expression

eFP Visualization

Data Source: BAR




Co-expression

Querying ATTED Service...
Data Source: ATTED-II
Top N
LS: LS is a monotonic transformation (negative logit) of MR index. Larger LS indicates stronger co-expression.

 

Homology

Phytozome Homologs

Data Source: Phytozome


0 Homologues

 

Other

7 Data Sets