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Genomics
Overlapping Features
Genome features that overlap coordinates of this Gene
CDSs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT3G27770:CDS:10 | 85 | Chr3: 10285818-10285902 | Arabidopsis thaliana |
AT3G27770:CDS:9 | 48 | Chr3: 10286019-10286066 | Arabidopsis thaliana |
AT3G27770:CDS:8 | 92 | Chr3: 10286149-10286240 | Arabidopsis thaliana |
AT3G27770:CDS:7 | 66 | Chr3: 10286331-10286396 | Arabidopsis thaliana |
AT3G27770:CDS:6 | 90 | Chr3: 10286525-10286614 | Arabidopsis thaliana |
AT3G27770:CDS:5 | 210 | Chr3: 10286729-10286938 | Arabidopsis thaliana |
AT3G27770:CDS:4 | 34 | Chr3: 10287026-10287059 | Arabidopsis thaliana |
AT3G27770:CDS:2 | 323 | Chr3: 10287152-10287474 | Arabidopsis thaliana |
AT3G27770:CDS:10.1 | 85 | Chr3: 10285818-10285902 | Arabidopsis thaliana |
AT3G27770:CDS:9.1 | 48 | Chr3: 10286019-10286066 | Arabidopsis thaliana |
AT3G27770:CDS:8.1 | 92 | Chr3: 10286149-10286240 | Arabidopsis thaliana |
AT3G27770:CDS:7.1 | 66 | Chr3: 10286331-10286396 | Arabidopsis thaliana |
AT3G27770:CDS:6.1 | 90 | Chr3: 10286525-10286614 | Arabidopsis thaliana |
AT3G27770:CDS:5.1 | 210 | Chr3: 10286729-10286938 | Arabidopsis thaliana |
AT3G27770:CDS:4.1 | 34 | Chr3: 10287026-10287059 | Arabidopsis thaliana |
AT3G27770:CDS:3 | 129 | Chr3: 10287152-10287280 | Arabidopsis thaliana |
AT3G27770:CDS:1 | 65 | Chr3: 10287397-10287461 | Arabidopsis thaliana |
Exons
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT3G27750:exon:1 | 1067 | Chr3: 10284808-10285874 | Arabidopsis thaliana |
AT3G27770:exon:13 | 246 | Chr3: 10285657-10285902 | Arabidopsis thaliana |
AT3G27770:exon:4 | 430 | Chr3: 10287152-10287581 | Arabidopsis thaliana |
AT3G27770:exon:1 | 264 | Chr3: 10287668-10287931 | Arabidopsis thaliana |
AT3G27770:exon:12 | 245 | Chr3: 10285658-10285902 | Arabidopsis thaliana |
AT3G27770:exon:11 | 48 | Chr3: 10286019-10286066 | Arabidopsis thaliana |
AT3G27770:exon:10 | 92 | Chr3: 10286149-10286240 | Arabidopsis thaliana |
AT3G27770:exon:9 | 66 | Chr3: 10286331-10286396 | Arabidopsis thaliana |
AT3G27770:exon:8 | 90 | Chr3: 10286525-10286614 | Arabidopsis thaliana |
AT3G27770:exon:7 | 210 | Chr3: 10286729-10286938 | Arabidopsis thaliana |
AT3G27770:exon:6 | 34 | Chr3: 10287026-10287059 | Arabidopsis thaliana |
AT3G27770:exon:5 | 129 | Chr3: 10287152-10287280 | Arabidopsis thaliana |
AT3G27770:exon:3 | 185 | Chr3: 10287397-10287581 | Arabidopsis thaliana |
AT3G27770:exon:2 | 91 | Chr3: 10287668-10287758 | Arabidopsis thaliana |
Five Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT3G27770:five_prime_UTR:3 | 107 | Chr3: 10287475-10287581 | Arabidopsis thaliana |
AT3G27770:five_prime_UTR:1 | 264 | Chr3: 10287668-10287931 | Arabidopsis thaliana |
AT3G27770:five_prime_UTR:4 | 120 | Chr3: 10287462-10287581 | Arabidopsis thaliana |
AT3G27770:five_prime_UTR:2 | 91 | Chr3: 10287668-10287758 | Arabidopsis thaliana |
Genes
DB identifier | Secondary Identifier | Symbol | Name | Length | Chromosome Location |
Organism . Short Name |
TAIR Computational Description | TAIR Curator Summary | TAIR Short Description | TAIR Aliases |
---|---|---|---|---|---|---|---|---|---|---|
AT3G27750 | locus:2089154 | EMB3123 | EMBRYO DEFECTIVE 3123 | 1067 | Chr3: 10284808-10285874 | A. thaliana | PPR containing protein;(source:Araport11) | Encodes a pentatricopeptide repeat (PPR) protein required for the splicing of specific group II introns. Null alleles are embryo lethal. | NULL | EMB3123, THA8 |
mRNAs
DB identifier | Length | Chromosome Location |
---|---|---|
AT3G27750.1 | 1067 | Chr3: 10284808-10285874 |
AT3G27770.1 | 1480 | Chr3: 10285657-10287931 |
AT3G27770.2 | 1190 | Chr3: 10285658-10287758 |
Three Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT3G27750:three_prime_UTR:1 | 386 | Chr3: 10285489-10285874 | Arabidopsis thaliana |
AT3G27770:three_prime_UTR:2 | 161 | Chr3: 10285657-10285817 | Arabidopsis thaliana |
AT3G27770:three_prime_UTR:1 | 160 | Chr3: 10285658-10285817 | Arabidopsis thaliana |
Function
Gene Ontology
cellular component | |
---|---|
membrane | ECO |
molecular function | |
No terms in this category. | |
biological process | |
No terms in this category. |
Interactions
Interaction Network
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Expression
Co-expression
Querying ATTED Service...
Data Source: ATTED-II |
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Top N
LS: LS is a monotonic transformation (negative logit) of MR index. Larger LS indicates stronger co-expression.
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