External Links
- Aracyc
- AceView
- Plant Proteome Database
- SUBA
- Gramene
- GeneVisible
- ABRC
- TAIR
- EnsemblPlants
- PGDD
- AtcisDB
- Plaza
- pep2pro
- NCBI-Entrez
- PIR
- AtGDB
- Agrisera Antibodies
- ATTED-II
- T-DNA Express
- AtGenExpress
- AthaMap
- Phytozome
Genomics
Transcript | Exons | Introns | ||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|
AT3G27473.1
AT3G27473.1
2196 |
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AT3G27473.2
AT3G27473.2
1979 |
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AT3G27473.3
AT3G27473.3
2078 |
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AT3G27473.4
AT3G27473.4
1968 |
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Overlapping Features
Genome features that overlap coordinates of this Gene
CDSs: 6, Exons: 8, Five Prime UTRs: 5, Gene: 1, Lnc RNA: 1, mRNAs: 4, Three Prime UTRs: 2, Transposable Elements: 2, Transposon Fragments: 2
CDSs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT3G27473:CDS:2 | 1989 | Chr3: 10169242-10171230 | Arabidopsis thaliana |
AT3G27473:CDS:4 | 1171 | Chr3: 10169242-10170412 | Arabidopsis thaliana |
AT3G27473:CDS:1 | 233 | Chr3: 10170523-10170755 | Arabidopsis thaliana |
AT3G27473:CDS:3 | 1836 | Chr3: 10169242-10171077 | Arabidopsis thaliana |
AT3G27473:CDS:4.1 | 1171 | Chr3: 10169242-10170412 | Arabidopsis thaliana |
AT3G27473:CDS:1.1 | 233 | Chr3: 10170523-10170755 | Arabidopsis thaliana |
Exons
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT3G27473:exon:7 | 2196 | Chr3: 10169123-10171318 | Arabidopsis thaliana |
AT3G27473:exon:6 | 1222 | Chr3: 10169191-10170412 | Arabidopsis thaliana |
AT3G27473:exon:2 | 757 | Chr3: 10170523-10171279 | Arabidopsis thaliana |
AT3G27473:exon:4 | 1978 | Chr3: 10169242-10171219 | Arabidopsis thaliana |
AT3G27473:exon:5 | 1171 | Chr3: 10169242-10170412 | Arabidopsis thaliana |
AT3G27473:exon:3 | 697 | Chr3: 10170523-10171219 | Arabidopsis thaliana |
AT3G27473:exon:1 | 100 | Chr3: 10171961-10172060 | Arabidopsis thaliana |
AT3G05245:exon:1 | 638 | Chr3: 10171927-10172564 | Arabidopsis thaliana |
Five Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT3G27473:five_prime_UTR:2 | 88 | Chr3: 10171231-10171318 | Arabidopsis thaliana |
AT3G27473:five_prime_UTR:4 | 524 | Chr3: 10170756-10171279 | Arabidopsis thaliana |
AT3G27473:five_prime_UTR:3 | 142 | Chr3: 10171078-10171219 | Arabidopsis thaliana |
AT3G27473:five_prime_UTR:5 | 464 | Chr3: 10170756-10171219 | Arabidopsis thaliana |
AT3G27473:five_prime_UTR:1 | 100 | Chr3: 10171961-10172060 | Arabidopsis thaliana |
Genes
DB identifier | Secondary Identifier | Symbol | Name | Length | Chromosome Location |
Organism . Short Name |
TAIR Computational Description | TAIR Curator Summary | TAIR Short Description | TAIR Aliases |
---|---|---|---|---|---|---|---|---|---|---|
AT3G05245 | AT3G05245 | 638 | Chr3: 10171927-10172564 | A. thaliana | None;(source:Araport11) | NULL |
mRNAs
DB identifier | Length | Chromosome Location |
---|---|---|
AT3G27473.1 | 2196 | Chr3: 10169123-10171318 |
AT3G27473.2 | 1979 | Chr3: 10169191-10171279 |
AT3G27473.3 | 2078 | Chr3: 10169242-10172060 |
AT3G27473.4 | 1968 | Chr3: 10169242-10172060 |
Three Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT3G27473:three_prime_UTR:2 | 119 | Chr3: 10169123-10169241 | Arabidopsis thaliana |
AT3G27473:three_prime_UTR:1 | 51 | Chr3: 10169191-10169241 | Arabidopsis thaliana |
Transposable Elements
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT3TE42275 | 433 | Chr3: 10168738-10169170 | Arabidopsis thaliana |
AT3TE42280 | 239 | Chr3: 10171481-10171719 | Arabidopsis thaliana |
Transposon Fragments
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT3TE42275:transposon_fragment:1 | 433 | Chr3: 10168738-10169170 | Arabidopsis thaliana |
AT3TE42280:transposon_fragment:1 | 239 | Chr3: 10171481-10171719 | Arabidopsis thaliana |
Function
Gene Ontology
cellular component | |
---|---|
No terms in this category. | |
molecular function | |
metal ion binding | ECO |
biological process | |
No terms in this category. |
Interactions
Interaction Network
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Expression
Co-expression
Querying ATTED Service...
Data Source: ATTED-II |
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Top N
LS: LS is a monotonic transformation (negative logit) of MR index. Larger LS indicates stronger co-expression.
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