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Gene : AT3G27110 A. thaliana

DB identifier  ? AT3G27110 Secondary Identifier  ? locus:2092010
Brief Description  Peptidase family M48 family protein
TAIR Computational Description  Peptidase family M48 family protein;(source:Araport11)
TAIR Curator Summary  PGM48 is a member of a plant specific clade of metallo-endopeptidase proteins. It is found in plastoglobules. Analysis of over-expression and loss of function phenotypes suggests PGM48 may have a role in positively regulating senescence.
TAIR Short Description  Peptidase family M48 family protein
TAIR Aliases  PGM48

0 Gene Rifs

1 Organism

10 Publications

0 Synonyms

Genomics

Genome feature

Region: gene ? Length: 2423  
Location: Chr3:9997808-10000230

Gene models - AT3G27110 AT3G27110

? Gene models

Transcripts: 5  Exons: 38  Introns: 33 

Overlapping Features

? Genome features that overlap coordinates of this Gene

21 Child Features

0 Cross References

1 Downstream Intergenic Region

0 Located Features

1 Upstream Intergenic Region

Proteins

Curated comments from UniProt

Type Comment Proteins
PGM48_ARATH developmental stage Accumulates during leaf senescence.
PGM48_ARATH function Metalloendopeptidase with a Zn-dependent proteolytic activity and substrate cleavage upstream of hydrophobic residues (PubMed:27895226). Positive regulator of senescence, probably by degrading CCD4, thus participating in the controlled removal of carotenoids from the thylakoid membrane during the senescence process (PubMed:27895226, PubMed:28534654).
A0A1I9LM41_ARATH A0A1I9LM40_ARATH A0A178VFN4_ARATH similarity Belongs to the peptidase M48 family.
PGM48_ARATH similarity Belongs to the peptidase M48 family. M48D subfamily.
PGM48_ARATH tissue specificity Mostly expressed in flowers (e.g. sepals, petals and stamen), seeds, leaves and cotyledons.

4 Proteins

Function

Gene Ontology

cellular component
chloroplast membrane  ? ECO  
plastoglobule  ? ECO  
molecular function
metal ion binding  ? ECO  
metalloendopeptidase activity  ? ECO  
biological process
leaf senescence  ? ECO  
proteolysis  ? ECO  
regulation of leaf senescence  ? ECO  

Interactions

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Expression

eFP Visualization

Data Source: BAR




Co-expression

Querying ATTED Service...
Data Source: ATTED-II
Top N
LS: LS is a monotonic transformation (negative logit) of MR index. Larger LS indicates stronger co-expression.

 

Homology

Phytozome Homologs

Data Source: Phytozome


0 Homologues

 

Other

6 Data Sets