Lists
This Gene is in one list:
External Links
- Aracyc
- AceView
- Plant Proteome Database
- SUBA
- Gramene
- GeneVisible
- ABRC
- TAIR
- EnsemblPlants
- PGDD
- AtcisDB
- Plaza
- pep2pro
- NCBI-Entrez
- PIR
- AtGDB
- Agrisera Antibodies
- ATTED-II
- T-DNA Express
- AtGenExpress
- AthaMap
- Phytozome
Genomics
Overlapping Features
Genome features that overlap coordinates of this Gene
Antisense lncRNA: 1, CDSs: 33, Exons: 20, Five Prime UTRs: 5, Genes: 3, mRNAs: 10, Three Prime UTRs: 6, Transposable Element: 1, Transposon Fragment: 1
CDSs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT3G26680:CDS:1 | 457 | Chr3: 9801309-9801765 | Arabidopsis thaliana |
AT3G26680:CDS:2 | 181 | Chr3: 9801865-9802045 | Arabidopsis thaliana |
AT3G26680:CDS:3 | 240 | Chr3: 9802123-9802362 | Arabidopsis thaliana |
AT3G26680:CDS:4 | 145 | Chr3: 9802466-9802610 | Arabidopsis thaliana |
AT3G26680:CDS:5 | 135 | Chr3: 9802693-9802827 | Arabidopsis thaliana |
AT3G26680:CDS:6 | 67 | Chr3: 9802929-9802995 | Arabidopsis thaliana |
AT3G26680:CDS:8 | 78 | Chr3: 9803072-9803149 | Arabidopsis thaliana |
AT3G26680:CDS:9 | 53 | Chr3: 9803271-9803323 | Arabidopsis thaliana |
AT3G26680:CDS:10 | 99 | Chr3: 9803419-9803517 | Arabidopsis thaliana |
AT3G26680:CDS:1.1 | 457 | Chr3: 9801309-9801765 | Arabidopsis thaliana |
AT3G26680:CDS:2.1 | 181 | Chr3: 9801865-9802045 | Arabidopsis thaliana |
AT3G26680:CDS:3.1 | 240 | Chr3: 9802123-9802362 | Arabidopsis thaliana |
AT3G26680:CDS:4.1 | 145 | Chr3: 9802466-9802610 | Arabidopsis thaliana |
AT3G26680:CDS:5.1 | 135 | Chr3: 9802693-9802827 | Arabidopsis thaliana |
AT3G26680:CDS:6.1 | 67 | Chr3: 9802929-9802995 | Arabidopsis thaliana |
AT3G26680:CDS:8.1 | 78 | Chr3: 9803072-9803149 | Arabidopsis thaliana |
AT3G26680:CDS:9.1 | 53 | Chr3: 9803271-9803323 | Arabidopsis thaliana |
AT3G26680:CDS:10.1 | 99 | Chr3: 9803419-9803517 | Arabidopsis thaliana |
AT3G26680:CDS:1.2 | 457 | Chr3: 9801309-9801765 | Arabidopsis thaliana |
AT3G26680:CDS:2.2 | 181 | Chr3: 9801865-9802045 | Arabidopsis thaliana |
AT3G26680:CDS:3.2 | 240 | Chr3: 9802123-9802362 | Arabidopsis thaliana |
AT3G26680:CDS:4.2 | 145 | Chr3: 9802466-9802610 | Arabidopsis thaliana |
AT3G26680:CDS:5.2 | 135 | Chr3: 9802693-9802827 | Arabidopsis thaliana |
AT3G26680:CDS:6.2 | 67 | Chr3: 9802929-9802995 | Arabidopsis thaliana |
AT3G26680:CDS:8.2 | 78 | Chr3: 9803072-9803149 | Arabidopsis thaliana |
AT3G26680:CDS:9.2 | 53 | Chr3: 9803271-9803323 | Arabidopsis thaliana |
AT3G26680:CDS:10.2 | 99 | Chr3: 9803419-9803517 | Arabidopsis thaliana |
AT3G26680:CDS:1.3 | 457 | Chr3: 9801309-9801765 | Arabidopsis thaliana |
AT3G26680:CDS:2.3 | 181 | Chr3: 9801865-9802045 | Arabidopsis thaliana |
AT3G26680:CDS:3.3 | 240 | Chr3: 9802123-9802362 | Arabidopsis thaliana |
Exons
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT3G26670:exon:2 | 740 | Chr3: 9800470-9801209 | Arabidopsis thaliana |
AT3G26670:exon:1 | 395 | Chr3: 9800815-9801209 | Arabidopsis thaliana |
AT3G26680:exon:1 | 597 | Chr3: 9801169-9801765 | Arabidopsis thaliana |
AT3G26680:exon:14 | 864 | Chr3: 9803419-9804282 | Arabidopsis thaliana |
AT3G26680:exon:13 | 131 | Chr3: 9803419-9803549 | Arabidopsis thaliana |
AT3G26680:exon:16 | 609 | Chr3: 9803639-9804247 | Arabidopsis thaliana |
AT3G26680:exon:2 | 579 | Chr3: 9801187-9801765 | Arabidopsis thaliana |
AT3G26680:exon:8 | 67 | Chr3: 9802929-9802995 | Arabidopsis thaliana |
AT3G26680:exon:10 | 78 | Chr3: 9803072-9803149 | Arabidopsis thaliana |
AT3G26680:exon:11 | 53 | Chr3: 9803271-9803323 | Arabidopsis thaliana |
AT3G26680:exon:12 | 99 | Chr3: 9803419-9803517 | Arabidopsis thaliana |
AT3G26680:exon:15 | 675 | Chr3: 9803608-9804282 | Arabidopsis thaliana |
AT3G26680:exon:3 | 556 | Chr3: 9801210-9801765 | Arabidopsis thaliana |
AT3G26680:exon:4 | 181 | Chr3: 9801865-9802045 | Arabidopsis thaliana |
AT3G26680:exon:5 | 240 | Chr3: 9802123-9802362 | Arabidopsis thaliana |
AT3G26680:exon:6 | 145 | Chr3: 9802466-9802610 | Arabidopsis thaliana |
AT3G26680:exon:7 | 135 | Chr3: 9802693-9802827 | Arabidopsis thaliana |
AT3G26680:exon:9 | 123 | Chr3: 9802929-9803051 | Arabidopsis thaliana |
AT3G05075:exon:1 | 523 | Chr3: 9803615-9804137 | Arabidopsis thaliana |
AT3G26690:exon:7 | 342 | Chr3: 9804253-9804594 | Arabidopsis thaliana |
Five Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT3G26670:five_prime_UTR:2 | 647 | Chr3: 9800563-9801209 | Arabidopsis thaliana |
AT3G26670:five_prime_UTR:1 | 395 | Chr3: 9800815-9801209 | Arabidopsis thaliana |
AT3G26680:five_prime_UTR:1 | 140 | Chr3: 9801169-9801308 | Arabidopsis thaliana |
AT3G26680:five_prime_UTR:2 | 122 | Chr3: 9801187-9801308 | Arabidopsis thaliana |
AT3G26680:five_prime_UTR:3 | 99 | Chr3: 9801210-9801308 | Arabidopsis thaliana |
Genes
DB identifier | Secondary Identifier | Symbol | Name | Length | Chromosome Location |
Organism . Short Name |
TAIR Computational Description | TAIR Curator Summary | TAIR Short Description | TAIR Aliases |
---|---|---|---|---|---|---|---|---|---|---|
AT3G26670 | locus:2090822 | AT3G26670 | 3226 | Chr3: 9797984-9801209 | A. thaliana | magnesium transporter, putative (DUF803);(source:Araport11) | NULL | Protein of unknown function (DUF803) | ||
AT3G05075 | AT3G05075 | 523 | Chr3: 9803615-9804137 | A. thaliana | Natural antisense transcript overlaps with AT3G26680;(source:Araport11) | NULL | ||||
AT3G26690 | locus:2090842 | NUDX13 | nudix hydrolase homolog 13 | 1529 | Chr3: 9804253-9805781 | A. thaliana | nudix hydrolase homolog 13;(source:Araport11) | Encodes AtNUDT13, a mitochondrial Nudix hydrolase specific for long-chain diadenosine polyphosphates. | nudix hydrolase homolog 13 | ATNUDT13, ATNUDX13, NUDX13 |
mRNAs
DB identifier | Length | Chromosome Location |
---|---|---|
AT3G26670.3 | 2019 | Chr3: 9797984-9801209 |
AT3G26670.4 | 2225 | Chr3: 9797984-9801209 |
AT3G26670.2 | 2072 | Chr3: 9797984-9801209 |
AT3G26670.1 | 2093 | Chr3: 9797986-9801209 |
AT3G26680.2 | 2360 | Chr3: 9801169-9804282 |
AT3G26680.3 | 2218 | Chr3: 9801187-9804247 |
AT3G26680.1 | 2252 | Chr3: 9801187-9804282 |
AT3G26680.4 | 1380 | Chr3: 9801210-9803051 |
AT3G26690.2 | 1157 | Chr3: 9804253-9805781 |
AT3G26690.1 | 1093 | Chr3: 9804253-9805781 |
Three Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT3G26680:three_prime_UTR:3 | 765 | Chr3: 9803518-9804282 | Arabidopsis thaliana |
AT3G26680:three_prime_UTR:2 | 32 | Chr3: 9803518-9803549 | Arabidopsis thaliana |
AT3G26680:three_prime_UTR:5 | 609 | Chr3: 9803639-9804247 | Arabidopsis thaliana |
AT3G26680:three_prime_UTR:1 | 1 | Chr3: 9803518-9803518 | Arabidopsis thaliana |
AT3G26680:three_prime_UTR:4 | 675 | Chr3: 9803608-9804282 | Arabidopsis thaliana |
AT3G26690:three_prime_UTR:1 | 165 | Chr3: 9804253-9804417 | Arabidopsis thaliana |
Transposable Elements
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT3TE40800 | 78 | Chr3: 9801519-9801596 | Arabidopsis thaliana |
Transposon Fragments
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT3TE40800:transposon_fragment:1 | 78 | Chr3: 9801519-9801596 | Arabidopsis thaliana |
Proteins
Curated comments from UniProt
Type | Comment | Proteins |
---|---|---|
SNM1_ARATH | function | May be required for repair of DNA lesions formed after exposure to oxidative stress. |
SNM1_ARATH A0A1I9LSS2_ARATH | similarity | Belongs to the DNA repair metallo-beta-lactamase (DRMBL) family. |
Function
Gene Ontology
cellular component | |
---|---|
nucleus | ECO |
molecular function | |
No terms in this category. | |
biological process | |
DNA repair | ECO |
Interactions
Interaction Network
Show the following interaction types:
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Expression
Co-expression
Querying ATTED Service...
Data Source: ATTED-II |
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Top N
LS: LS is a monotonic transformation (negative logit) of MR index. Larger LS indicates stronger co-expression.
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