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Gene : ATRZ-1A A. thaliana

DB identifier  ? AT3G26420 Secondary Identifier  ? locus:2079276
Brief Description  RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain-containing protein
TAIR Computational Description  RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain-containing protein;(source:Araport11)
TAIR Curator Summary  Zinc finger-containing glycine-rich RNA-binding protein. Cold-inducible. Contributes to the enhancement of freezing tolerance. Members of this protein family include AT3G26420 (ATRZ-1A), AT1G60650 (AtRZ-1b) and AT5G04280 (AtRZ-1c).
TAIR Short Description  RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain
TAIR Aliases  ATRZ-1A, RBGB2, RZ-1A

3 Gene Rifs

1 Organism

16 Publications

0 Synonyms

Genomics

Genome feature

Region: gene ? Length: 4489  
Location: Chr3:9671517-9676005

Gene models - ATRZ-1A AT3G26420

? Gene models

Transcripts: 1  Exons: 8  Introns: 7 

Overlapping Features

? Genome features that overlap coordinates of this Gene

9 Child Features

1 Cross References

1 Downstream Intergenic Region

0 Located Features

1 Upstream Intergenic Region

Proteins

Curated comments from UniProt

Type Comment Proteins
RZ1A_ARATH function Binds RNA and DNA sequences with a preference to single-stranded nucleic acids. Displays strong affinity to poly(G) and poly(U) sequences. May be involved in tolerance to cold stress.
RZ1A_ARATH tissue specificity Expressed in roots, leaves, stems and flowers.

1 Proteins

Function

Gene Ontology

cellular component
cytosol  ? ECO  
nucleus  ? ECO  
cytoplasm  ? ECO  
molecular function
nucleotide binding  ? ECO  
zinc ion binding  ? ECO  
mRNA binding  ? ECO  
DNA binding  ? ECO  
biological process
response to cold  ? ECO  

Interactions

Interaction Network

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Expression

eFP Visualization

Data Source: BAR




Co-expression

Querying ATTED Service...
Data Source: ATTED-II
Top N
LS: LS is a monotonic transformation (negative logit) of MR index. Larger LS indicates stronger co-expression.

 

Homology

Phytozome Homologs

Data Source: Phytozome


0 Homologues

 

Other

9 Data Sets