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Genomics
Overlapping Features
Genome features that overlap coordinates of this Gene
CDSs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT3G25690:CDS:2 | 97 | Chr3: 9354061-9354157 | Arabidopsis thaliana |
AT3G25690:CDS:4 | 65 | Chr3: 9354250-9354314 | Arabidopsis thaliana |
AT3G25690:CDS:5 | 765 | Chr3: 9354383-9355147 | Arabidopsis thaliana |
AT3G25690:CDS:7 | 1389 | Chr3: 9355223-9356611 | Arabidopsis thaliana |
AT3G25690:CDS:8 | 132 | Chr3: 9356690-9356821 | Arabidopsis thaliana |
AT3G25690:CDS:9 | 182 | Chr3: 9356913-9357094 | Arabidopsis thaliana |
AT3G25690:CDS:10 | 112 | Chr3: 9357170-9357281 | Arabidopsis thaliana |
AT3G25690:CDS:11 | 144 | Chr3: 9357389-9357532 | Arabidopsis thaliana |
AT3G25690:CDS:12 | 129 | Chr3: 9357629-9357757 | Arabidopsis thaliana |
AT3G25690:CDS:1 | 22 | Chr3: 9353050-9353071 | Arabidopsis thaliana |
AT3G25690:CDS:3 | 81 | Chr3: 9354077-9354157 | Arabidopsis thaliana |
AT3G25690:CDS:4.1 | 65 | Chr3: 9354250-9354314 | Arabidopsis thaliana |
AT3G25690:CDS:5.1 | 765 | Chr3: 9354383-9355147 | Arabidopsis thaliana |
AT3G25690:CDS:7.1 | 1389 | Chr3: 9355223-9356611 | Arabidopsis thaliana |
AT3G25690:CDS:8.1 | 132 | Chr3: 9356690-9356821 | Arabidopsis thaliana |
AT3G25690:CDS:9.1 | 182 | Chr3: 9356913-9357094 | Arabidopsis thaliana |
AT3G25690:CDS:10.1 | 112 | Chr3: 9357170-9357281 | Arabidopsis thaliana |
AT3G25690:CDS:11.1 | 144 | Chr3: 9357389-9357532 | Arabidopsis thaliana |
AT3G25690:CDS:12.1 | 129 | Chr3: 9357629-9357757 | Arabidopsis thaliana |
AT3G25690:CDS:2.1 | 97 | Chr3: 9354061-9354157 | Arabidopsis thaliana |
AT3G25690:CDS:4.2 | 65 | Chr3: 9354250-9354314 | Arabidopsis thaliana |
AT3G25690:CDS:5.2 | 765 | Chr3: 9354383-9355147 | Arabidopsis thaliana |
AT3G25690:CDS:7.2 | 1389 | Chr3: 9355223-9356611 | Arabidopsis thaliana |
AT3G25690:CDS:8.2 | 132 | Chr3: 9356690-9356821 | Arabidopsis thaliana |
AT3G25690:CDS:9.2 | 182 | Chr3: 9356913-9357094 | Arabidopsis thaliana |
AT3G25690:CDS:10.2 | 112 | Chr3: 9357170-9357281 | Arabidopsis thaliana |
AT3G25690:CDS:11.2 | 144 | Chr3: 9357389-9357532 | Arabidopsis thaliana |
AT3G25690:CDS:12.2 | 129 | Chr3: 9357629-9357757 | Arabidopsis thaliana |
AT3G25690:CDS:2.2 | 97 | Chr3: 9354061-9354157 | Arabidopsis thaliana |
AT3G25690:CDS:4.3 | 65 | Chr3: 9354250-9354314 | Arabidopsis thaliana |
Exons
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT3G25690:exon:1 | 185 | Chr3: 9352444-9352628 | Arabidopsis thaliana |
AT3G25690:exon:7 | 81 | Chr3: 9354077-9354157 | Arabidopsis thaliana |
AT3G25690:exon:2 | 156 | Chr3: 9352473-9352628 | Arabidopsis thaliana |
AT3G25690:exon:4 | 1148 | Chr3: 9353010-9354157 | Arabidopsis thaliana |
AT3G25690:exon:3 | 62 | Chr3: 9353010-9353071 | Arabidopsis thaliana |
AT3G25690:exon:6 | 242 | Chr3: 9353916-9354157 | Arabidopsis thaliana |
AT3G25690:exon:10 | 342 | Chr3: 9354806-9355147 | Arabidopsis thaliana |
AT3G25690:exon:17 | 325 | Chr3: 9357629-9357953 | Arabidopsis thaliana |
AT3G25690:exon:5 | 887 | Chr3: 9353271-9354157 | Arabidopsis thaliana |
AT3G25690:exon:8 | 65 | Chr3: 9354250-9354314 | Arabidopsis thaliana |
AT3G25690:exon:9 | 765 | Chr3: 9354383-9355147 | Arabidopsis thaliana |
AT3G25690:exon:11 | 1389 | Chr3: 9355223-9356611 | Arabidopsis thaliana |
AT3G25690:exon:12 | 132 | Chr3: 9356690-9356821 | Arabidopsis thaliana |
AT3G25690:exon:13 | 182 | Chr3: 9356913-9357094 | Arabidopsis thaliana |
AT3G25690:exon:14 | 112 | Chr3: 9357170-9357281 | Arabidopsis thaliana |
AT3G25690:exon:15 | 144 | Chr3: 9357389-9357532 | Arabidopsis thaliana |
AT3G25690:exon:16 | 271 | Chr3: 9357629-9357899 | Arabidopsis thaliana |
Five Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT3G25690:five_prime_UTR:1 | 185 | Chr3: 9352444-9352628 | Arabidopsis thaliana |
AT3G25690:five_prime_UTR:3 | 40 | Chr3: 9353010-9353049 | Arabidopsis thaliana |
AT3G25690:five_prime_UTR:2 | 156 | Chr3: 9352473-9352628 | Arabidopsis thaliana |
AT3G25690:five_prime_UTR:5 | 1051 | Chr3: 9353010-9354060 | Arabidopsis thaliana |
AT3G25690:five_prime_UTR:4 | 62 | Chr3: 9353010-9353071 | Arabidopsis thaliana |
AT3G25690:five_prime_UTR:7 | 145 | Chr3: 9353916-9354060 | Arabidopsis thaliana |
AT3G25690:five_prime_UTR:6 | 790 | Chr3: 9353271-9354060 | Arabidopsis thaliana |
mRNAs
DB identifier | Length | Chromosome Location |
---|---|---|
AT3G25690.4 | 3603 | Chr3: 9352444-9357953 |
AT3G25690.5 | 3442 | Chr3: 9352444-9357953 |
AT3G25690.6 | 4364 | Chr3: 9352473-9357899 |
AT3G25690.2 | 3418 | Chr3: 9353010-9357953 |
AT3G25690.3 | 2995 | Chr3: 9353010-9357953 |
AT3G25690.1 | 3947 | Chr3: 9353271-9357899 |
Three Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT3G25690:three_prime_UTR:2 | 196 | Chr3: 9357758-9357953 | Arabidopsis thaliana |
AT3G25690:three_prime_UTR:1 | 142 | Chr3: 9357758-9357899 | Arabidopsis thaliana |
Proteins
Curated comments from UniProt
Type | Comment | Proteins |
---|---|---|
CHUP1_ARATH | function | Required for the positioning and movement of chloroplasts. Interacts with profilin and actin independent of its polymerization status. Regulates chloroplast localization by anchoring chloroplasts to the plasma membrane and forming a bridge to the actin cytoskeleton. |
CHUP1_ARATH | tissue specificity | Expressed in cauline leaves, rosette leaves, stems and flowers, but not in roots. |
Function
Gene Ontology
cellular component | |
---|---|
chloroplast outer membrane | ECO |
cytosol | ECO |
chloroplast | ECO |
molecular function | |
No terms in this category. | |
biological process | |
chloroplast organization | ECO |
chloroplast relocation | ECO |
Interactions
Interaction Network
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Expression
Co-expression
Querying ATTED Service...
Data Source: ATTED-II |
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Top N
LS: LS is a monotonic transformation (negative logit) of MR index. Larger LS indicates stronger co-expression.
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