External Links
Genomics
Overlapping Features
Genome features that overlap coordinates of this Gene
Antisense lncRNA: 1, CDSs: 83, Exons: 31, Five Prime UTRs: 3, Genes: 2, mRNAs: 5, Three Prime UTRs: 3
CDSs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT3G24870:CDS:26 | 1530 | Chr3: 9075237-9076766 | Arabidopsis thaliana |
AT3G24870:CDS:23 | 379 | Chr3: 9077022-9077400 | Arabidopsis thaliana |
AT3G24870:CDS:22 | 195 | Chr3: 9077516-9077710 | Arabidopsis thaliana |
AT3G24870:CDS:21 | 101 | Chr3: 9077796-9077896 | Arabidopsis thaliana |
AT3G24870:CDS:20 | 117 | Chr3: 9078471-9078587 | Arabidopsis thaliana |
AT3G24870:CDS:19 | 138 | Chr3: 9078673-9078810 | Arabidopsis thaliana |
AT3G24870:CDS:18 | 81 | Chr3: 9079019-9079099 | Arabidopsis thaliana |
AT3G24870:CDS:17 | 54 | Chr3: 9079184-9079237 | Arabidopsis thaliana |
AT3G24870:CDS:16 | 197 | Chr3: 9079316-9079512 | Arabidopsis thaliana |
AT3G24870:CDS:15 | 46 | Chr3: 9079734-9079779 | Arabidopsis thaliana |
AT3G24870:CDS:14 | 54 | Chr3: 9080104-9080157 | Arabidopsis thaliana |
AT3G24870:CDS:12 | 518 | Chr3: 9080257-9080774 | Arabidopsis thaliana |
AT3G24870:CDS:11 | 55 | Chr3: 9080849-9080903 | Arabidopsis thaliana |
AT3G24870:CDS:9 | 81 | Chr3: 9081023-9081103 | Arabidopsis thaliana |
AT3G24870:CDS:8 | 189 | Chr3: 9081200-9081388 | Arabidopsis thaliana |
AT3G24870:CDS:7 | 204 | Chr3: 9081706-9081909 | Arabidopsis thaliana |
AT3G24870:CDS:6 | 120 | Chr3: 9082118-9082237 | Arabidopsis thaliana |
AT3G24870:CDS:5 | 1363 | Chr3: 9082346-9083708 | Arabidopsis thaliana |
AT3G24870:CDS:3 | 138 | Chr3: 9083785-9083922 | Arabidopsis thaliana |
AT3G24870:CDS:1 | 140 | Chr3: 9084139-9084278 | Arabidopsis thaliana |
AT3G24870:CDS:25 | 1536 | Chr3: 9075237-9076772 | Arabidopsis thaliana |
AT3G24870:CDS:23.1 | 379 | Chr3: 9077022-9077400 | Arabidopsis thaliana |
AT3G24870:CDS:22.1 | 195 | Chr3: 9077516-9077710 | Arabidopsis thaliana |
AT3G24870:CDS:21.1 | 101 | Chr3: 9077796-9077896 | Arabidopsis thaliana |
AT3G24870:CDS:20.1 | 117 | Chr3: 9078471-9078587 | Arabidopsis thaliana |
AT3G24870:CDS:19.1 | 138 | Chr3: 9078673-9078810 | Arabidopsis thaliana |
AT3G24870:CDS:18.1 | 81 | Chr3: 9079019-9079099 | Arabidopsis thaliana |
AT3G24870:CDS:17.1 | 54 | Chr3: 9079184-9079237 | Arabidopsis thaliana |
AT3G24870:CDS:16.1 | 197 | Chr3: 9079316-9079512 | Arabidopsis thaliana |
AT3G24870:CDS:15.1 | 46 | Chr3: 9079734-9079779 | Arabidopsis thaliana |
Exons
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT3G24860:exon:1 | 1060 | Chr3: 9073623-9074682 | Arabidopsis thaliana |
AT3G24870:exon:29 | 2102 | Chr3: 9074665-9076766 | Arabidopsis thaliana |
AT3G24870:exon:13 | 55 | Chr3: 9080849-9080903 | Arabidopsis thaliana |
AT3G24870:exon:5 | 138 | Chr3: 9083785-9083922 | Arabidopsis thaliana |
AT3G24870:exon:28 | 2108 | Chr3: 9074665-9076772 | Arabidopsis thaliana |
AT3G24870:exon:1 | 400 | Chr3: 9085020-9085419 | Arabidopsis thaliana |
AT3G24870:exon:27 | 1536 | Chr3: 9075237-9076772 | Arabidopsis thaliana |
AT3G24870:exon:15 | 512 | Chr3: 9080257-9080768 | Arabidopsis thaliana |
AT3G24870:exon:26 | 38 | Chr3: 9076854-9076891 | Arabidopsis thaliana |
AT3G24870:exon:25 | 379 | Chr3: 9077022-9077400 | Arabidopsis thaliana |
AT3G24870:exon:24 | 195 | Chr3: 9077516-9077710 | Arabidopsis thaliana |
AT3G24870:exon:23 | 101 | Chr3: 9077796-9077896 | Arabidopsis thaliana |
AT3G24870:exon:22 | 117 | Chr3: 9078471-9078587 | Arabidopsis thaliana |
AT3G24870:exon:21 | 138 | Chr3: 9078673-9078810 | Arabidopsis thaliana |
AT3G24870:exon:20 | 81 | Chr3: 9079019-9079099 | Arabidopsis thaliana |
AT3G24870:exon:19 | 54 | Chr3: 9079184-9079237 | Arabidopsis thaliana |
AT3G24870:exon:18 | 197 | Chr3: 9079316-9079512 | Arabidopsis thaliana |
AT3G24870:exon:17 | 46 | Chr3: 9079734-9079779 | Arabidopsis thaliana |
AT3G24870:exon:16 | 54 | Chr3: 9080104-9080157 | Arabidopsis thaliana |
AT3G24870:exon:14 | 518 | Chr3: 9080257-9080774 | Arabidopsis thaliana |
AT3G24870:exon:12 | 58 | Chr3: 9080849-9080906 | Arabidopsis thaliana |
AT3G24870:exon:11 | 81 | Chr3: 9081023-9081103 | Arabidopsis thaliana |
AT3G24870:exon:10 | 189 | Chr3: 9081200-9081388 | Arabidopsis thaliana |
AT3G24870:exon:9 | 204 | Chr3: 9081706-9081909 | Arabidopsis thaliana |
AT3G24870:exon:8 | 120 | Chr3: 9082118-9082237 | Arabidopsis thaliana |
AT3G24870:exon:7 | 1363 | Chr3: 9082346-9083708 | Arabidopsis thaliana |
AT3G24870:exon:6 | 98 | Chr3: 9083785-9083882 | Arabidopsis thaliana |
AT3G24870:exon:4 | 55 | Chr3: 9083976-9084030 | Arabidopsis thaliana |
AT3G24870:exon:3 | 180 | Chr3: 9084139-9084318 | Arabidopsis thaliana |
AT3G24870:exon:2 | 29 | Chr3: 9085020-9085048 | Arabidopsis thaliana |
Five Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT3G24870:five_prime_UTR:1 | 400 | Chr3: 9085020-9085419 | Arabidopsis thaliana |
AT3G24870:five_prime_UTR:3 | 40 | Chr3: 9084279-9084318 | Arabidopsis thaliana |
AT3G24870:five_prime_UTR:2 | 29 | Chr3: 9085020-9085048 | Arabidopsis thaliana |
Genes
DB identifier | Secondary Identifier | Symbol | Name | Length | Chromosome Location |
Organism . Short Name |
TAIR Computational Description | TAIR Curator Summary | TAIR Short Description | TAIR Aliases |
---|---|---|---|---|---|---|---|---|---|---|
AT3G24860 | locus:2087288 | AT3G24860 | 1060 | Chr3: 9073623-9074682 | A. thaliana | Homeodomain-like superfamily protein;(source:Araport11) | Trihelix transcription factor induced by osmotic and salt stress. Binds to a conserved AGAG-box sequence in the promoter of genes it regulates. Regulates the expression of stress tolerance genes, resulting in reduced reactive oxygen species, Na+ accumulation, stomatal apertures, lipid peroxidation, cell death and water loss rate, and increased proline content and reactive oxygen species scavenging capability. | Homeodomain-like superfamily protein | AST1 | |
AT3G04835 | AT3G04835 | 217 | Chr3: 9074930-9075146 | A. thaliana | Natural antisense transcript overlaps with AT3G24870;(source:Araport11) | NULL |
mRNAs
DB identifier | Length | Chromosome Location |
---|---|---|
AT3G24860.1 | 1060 | Chr3: 9073623-9074682 |
AT3G24870.2 | 6341 | Chr3: 9074665-9085048 |
AT3G24870.1 | 6736 | Chr3: 9074665-9085419 |
AT3G24870.3 | 5787 | Chr3: 9075237-9085048 |
AT3G24870.4 | 4295 | Chr3: 9076854-9085048 |
Three Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT3G24860:three_prime_UTR:1 | 108 | Chr3: 9074575-9074682 | Arabidopsis thaliana |
AT3G24870:three_prime_UTR:2 | 572 | Chr3: 9074665-9075236 | Arabidopsis thaliana |
AT3G24870:three_prime_UTR:1 | 14 | Chr3: 9076854-9076867 | Arabidopsis thaliana |
Proteins
Curated comments from UniProt
Type | Comment | Proteins |
---|---|---|
EAF1B_ARATH | function | Component of the NuA4 histone acetyltransferase complex which is involved in transcriptional activation of selected genes principally by acetylation of nucleosomal histone H4 and H2A. |
A0A1I9LPB0_ARATH EAF1B_ARATH A0A1I9LPB1_ARATH F4J7T1_ARATH | similarity | Belongs to the EAF1 family. |
EAF1B_ARATH | tissue specificity | Expressed in leaves. |
Function
Gene Ontology
cellular component | |
---|---|
apoplast | ECO |
NuA4 histone acetyltransferase complex | ECO |
nucleus | ECO |
molecular function | |
DNA binding | ECO |
biological process | |
regulation of flower development | ECO |
chromatin organization | ECO |
histone H4-K5 acetylation | ECO |
regulation of photoperiodism, flowering | ECO |
regulation of timing of transition from vegetative to reproductive phase | ECO |
Expression
Co-expression
Querying ATTED Service...
Data Source: ATTED-II |
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Top N
LS: LS is a monotonic transformation (negative logit) of MR index. Larger LS indicates stronger co-expression.
Waiting for results...