help  | faq  | software  | BAR
Hide

Oops!

Error: 403
Hide

Oops!

https://bar.utoronto.ca/thalemine/service/ is incorrect
Hide Your session has expired. If you were not logged in, your data (including query history and any lists you made) has been cleared.Your session has expired. If you were not logged in, your data (including query history and any lists you made) has been cleared.

Gene : PRT1 A. thaliana

DB identifier  ? AT3G24800 Secondary Identifier  ? locus:2087278
Name  ? proteolysis 1 Brief Description  proteolysis 1
TAIR Computational Description  proteolysis 1;(source:Araport11)
TAIR Curator Summary  Contains two ring finger domains and one ZZ domain. Weak similarity to yeast Rad18p. Putative component of the N-end rule pathway (ubiquitin-dependent proteolysis) that is involved in the response to pathogens.
TAIR Short Description  proteolysis 1
TAIR Aliases  PRT1

0 Gene Rifs

1 Organism

16 Publications

0 Synonyms

Genomics

Genome feature

Region: gene ? Length: 2512  
Location: Chr3:9055509-9058020

Gene models - PRT1 AT3G24800

? Gene models

Transcripts: 1  Exons: 8  Introns: 7 

Overlapping Features

? Genome features that overlap coordinates of this Gene

9 Child Features

1 Cross References

1 Downstream Intergenic Region

0 Located Features

1 Upstream Intergenic Region

Proteins

Curated comments from UniProt

Type Comment Proteins
PRT1_ARATH function E3 ubiquitin-protein ligase that mediates ubiquitination and subsequent proteasomal degradation of target proteins. Functions in the N-end rule pathway of protein degradation, where it specifically recognizes and ubiquitinates proteins with a N-terminal bulky aromatic amino acid (Phe). Does not act on aliphatic hydrophobic and basic N-terminal residues (Arg or Leu) containing proteins.
PRT1_ARATH pathway Protein modification; protein ubiquitination.

1 Proteins

Function

Gene Ontology

cellular component
cytoplasm  ? ECO  
molecular function
ubiquitin protein ligase activity  ? ECO  
zinc ion binding  ? ECO  
biological process
protein ubiquitination  ? ECO  
ubiquitin-dependent protein catabolic process via the N-end rule pathway  ? ECO  
defense response to fungus  ? ECO  

Interactions

Interaction Network

Show the following interaction types:
Reset view
Show in table format
Export graph

Click on a gene to get more info about it.

Expression

eFP Visualization

Data Source: BAR




Co-expression

Querying ATTED Service...
Data Source: ATTED-II
Top N
LS: LS is a monotonic transformation (negative logit) of MR index. Larger LS indicates stronger co-expression.

 

Homology

Phytozome Homologs

Data Source: Phytozome


0 Homologues

 

Other

7 Data Sets