help  | faq  | software  | BAR
Hide

Oops!

Error: 403

Gene : MSH1 A. thaliana

DB identifier  ? AT3G24320 Secondary Identifier  ? locus:2087193
Name  ? MUTL protein homolog 1 Brief Description  MUTL protein homolog 1
TAIR Computational Description  MUTL protein homolog 1;(source:Araport11)
TAIR Curator Summary  Encodes a DNA binding protein that promotes re-arrangements of mitochondrial genome. Mutations affects mitochondrial gene expression, and impairs mitochondrial function. Dual targeting of the protein to mitochondria and chloroplasts caused by alternative translation initiation. Plastid MSH1 depletion results in variegation, abiotic stress tolerance, variable growth rate, and delayed maturity.
TAIR Short Description  MUTL protein homolog 1
TAIR Aliases  ATMSH1, CHM, CHM1, MSH1

10 Gene Rifs

1 Organism

24 Publications

0 Synonyms

Genomics

Genome feature

Region: gene ? Length: 6805  
Location: Chr3:8822924-8829728 reverse strand

Gene models - MSH1 AT3G24320

? Gene models

Transcripts: 2  Exons: 39  Introns: 37 

Overlapping Features

? Genome features that overlap coordinates of this Gene

26 Child Features

0 Cross References

1 Downstream Intergenic Region

0 Located Features

1 Upstream Intergenic Region

Proteins

Curated comments from UniProt

Type Comment Proteins
MSH1_ARATH function DNA mismatch repair protein specifically involved in maintenance of mitochondrial genome configuration by controlling specific rearranged portion. Functions by suppressing asymmetric recombination at some repeat pairs.
MSH1_ARATH similarity Belongs to the DNA mismatch repair MutS family.
MSH1_ARATH subcellular location Predominantly targeted to the mitochondrion.

2 Proteins

Function

Gene Ontology

cellular component
thylakoid membrane  ? ECO  
plastid  ? ECO  
chloroplast  ? ECO  
mitochondrion  ? ECO  
molecular function
ATP binding  ? ECO  
DNA binding  ? ECO  
mismatched DNA binding  ? ECO  
biological process
response to heat  ? ECO  
mitochondrial genome maintenance  ? ECO  
mitochondrial DNA metabolic process  ? ECO  
mismatch repair  ? ECO  

Interactions

Interaction Network

Show the following interaction types:
Reset view
Show in table format
Export graph

Click on a gene to get more info about it.

Expression

eFP Visualization

Data Source: BAR




Co-expression

Querying ATTED Service...
Data Source: ATTED-II
Top N
LS: LS is a monotonic transformation (negative logit) of MR index. Larger LS indicates stronger co-expression.

 

Homology

Phytozome Homologs

Data Source: Phytozome


0 Homologues

 

Other

7 Data Sets