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Gene : AT3G23900 A. thaliana

DB identifier  ? AT3G23900 Secondary Identifier  ? locus:2076121
Brief Description  RNA recognition motif (RRM)-containing protein
TAIR Computational Description  RNA recognition motif (RRM)-containing protein;(source:Araport11)
TAIR Curator Summary  Physically interacts with, and promotes canonical splicing of, transcripts encoding defense signaling proteins, including the key negative regulator of pattern recognition receptor signaling complexes, CALCIUM-DEPENDENT PROTEIN KINASE 28 (CPK28). Upon immune activation by Plant Elicitor Peptides (Peps), IRR is dephosphorylated, disrupting interaction with CPK28 transcripts and resulting in accumulation of an alternative splice variant encoding a truncated CPK28 protein with impaired kinase activity and diminished function as a negative regulator.
TAIR Short Description  RNA recognition motif (RRM)-containing protein
TAIR Aliases  IRR

0 Gene Rifs

1 Organism

5 Publications

0 Synonyms

Genomics

Genome feature

Region: gene ? Length: 4585  
Location: Chr3:8631482-8636066 reverse strand

Gene models - AT3G23900 AT3G23900

? Gene models

Transcripts: 4  Exons: 27  Introns: 23 

Overlapping Features

? Genome features that overlap coordinates of this Gene

19 Child Features

0 Cross References

1 Downstream Intergenic Region

0 Located Features

1 Upstream Intergenic Region

Proteins

Curated comments from UniProt

No comments found

2 Proteins

Function

Gene Ontology

cellular component
No terms in this category.
molecular function
mRNA binding  ? ECO  
metal ion binding  ? ECO  
biological process
response to peptide  ? ECO  

Interactions

Interaction Network

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Expression

eFP Visualization

Data Source: BAR




Co-expression

Querying ATTED Service...
Data Source: ATTED-II
Top N
LS: LS is a monotonic transformation (negative logit) of MR index. Larger LS indicates stronger co-expression.

 

Homology

Phytozome Homologs

Data Source: Phytozome


0 Homologues

 

Other

6 Data Sets