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Genomics
Overlapping Features
Genome features that overlap coordinates of this Gene
CDSs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT3G23870:CDS:1 | 187 | Chr3: 8620253-8620439 | Arabidopsis thaliana |
AT3G23870:CDS:2 | 91 | Chr3: 8620514-8620604 | Arabidopsis thaliana |
AT3G23870:CDS:4 | 161 | Chr3: 8620695-8620855 | Arabidopsis thaliana |
AT3G23870:CDS:5 | 128 | Chr3: 8620944-8621071 | Arabidopsis thaliana |
AT3G23870:CDS:6 | 138 | Chr3: 8621153-8621290 | Arabidopsis thaliana |
AT3G23870:CDS:7 | 93 | Chr3: 8621368-8621460 | Arabidopsis thaliana |
AT3G23870:CDS:8 | 210 | Chr3: 8621546-8621755 | Arabidopsis thaliana |
AT3G23870:CDS:1.1 | 187 | Chr3: 8620253-8620439 | Arabidopsis thaliana |
AT3G23870:CDS:2.1 | 91 | Chr3: 8620514-8620604 | Arabidopsis thaliana |
AT3G23870:CDS:4.1 | 161 | Chr3: 8620695-8620855 | Arabidopsis thaliana |
AT3G23870:CDS:5.1 | 128 | Chr3: 8620944-8621071 | Arabidopsis thaliana |
AT3G23870:CDS:6.1 | 138 | Chr3: 8621153-8621290 | Arabidopsis thaliana |
AT3G23870:CDS:7.1 | 93 | Chr3: 8621368-8621460 | Arabidopsis thaliana |
AT3G23870:CDS:8.1 | 210 | Chr3: 8621546-8621755 | Arabidopsis thaliana |
AT3G23870:CDS:1.2 | 187 | Chr3: 8620253-8620439 | Arabidopsis thaliana |
AT3G23870:CDS:2.2 | 91 | Chr3: 8620514-8620604 | Arabidopsis thaliana |
AT3G23870:CDS:4.2 | 161 | Chr3: 8620695-8620855 | Arabidopsis thaliana |
AT3G23870:CDS:5.2 | 128 | Chr3: 8620944-8621071 | Arabidopsis thaliana |
AT3G23870:CDS:6.2 | 138 | Chr3: 8621153-8621290 | Arabidopsis thaliana |
AT3G23870:CDS:7.2 | 93 | Chr3: 8621368-8621460 | Arabidopsis thaliana |
AT3G23870:CDS:8.2 | 210 | Chr3: 8621546-8621755 | Arabidopsis thaliana |
AT3G23870:CDS:1.3 | 187 | Chr3: 8620253-8620439 | Arabidopsis thaliana |
AT3G23870:CDS:2.3 | 91 | Chr3: 8620514-8620604 | Arabidopsis thaliana |
AT3G23870:CDS:4.3 | 161 | Chr3: 8620695-8620855 | Arabidopsis thaliana |
AT3G23870:CDS:5.3 | 128 | Chr3: 8620944-8621071 | Arabidopsis thaliana |
AT3G23870:CDS:6.3 | 138 | Chr3: 8621153-8621290 | Arabidopsis thaliana |
AT3G23870:CDS:7.3 | 93 | Chr3: 8621368-8621460 | Arabidopsis thaliana |
AT3G23870:CDS:8.3 | 210 | Chr3: 8621546-8621755 | Arabidopsis thaliana |
AT3G23870:CDS:3 | 199 | Chr3: 8620657-8620855 | Arabidopsis thaliana |
AT3G23870:CDS:5.4 | 128 | Chr3: 8620944-8621071 | Arabidopsis thaliana |
Exons
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT3G23860:exon:1 | 71 | Chr3: 8619215-8619285 | Arabidopsis thaliana |
AT3G23870:exon:1 | 276 | Chr3: 8619192-8619467 | Arabidopsis thaliana |
AT3G23870:exon:2 | 253 | Chr3: 8619555-8619807 | Arabidopsis thaliana |
AT3G23870:exon:3 | 269 | Chr3: 8619558-8619826 | Arabidopsis thaliana |
AT3G23870:exon:5 | 304 | Chr3: 8620136-8620439 | Arabidopsis thaliana |
AT3G23870:exon:4 | 594 | Chr3: 8619846-8620439 | Arabidopsis thaliana |
AT3G23870:exon:6 | 91 | Chr3: 8620514-8620604 | Arabidopsis thaliana |
AT3G23870:exon:8 | 161 | Chr3: 8620695-8620855 | Arabidopsis thaliana |
AT3G23870:exon:13 | 404 | Chr3: 8621546-8621949 | Arabidopsis thaliana |
AT3G23870:exon:7 | 237 | Chr3: 8620619-8620855 | Arabidopsis thaliana |
AT3G23870:exon:9 | 128 | Chr3: 8620944-8621071 | Arabidopsis thaliana |
AT3G23870:exon:10 | 138 | Chr3: 8621153-8621290 | Arabidopsis thaliana |
AT3G23870:exon:11 | 93 | Chr3: 8621368-8621460 | Arabidopsis thaliana |
AT3G23870:exon:12 | 362 | Chr3: 8621546-8621907 | Arabidopsis thaliana |
Five Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT3G23860:five_prime_UTR:1 | 71 | Chr3: 8619215-8619285 | Arabidopsis thaliana |
AT3G23870:five_prime_UTR:1 | 276 | Chr3: 8619192-8619467 | Arabidopsis thaliana |
AT3G23870:five_prime_UTR:2 | 253 | Chr3: 8619555-8619807 | Arabidopsis thaliana |
AT3G23870:five_prime_UTR:3 | 269 | Chr3: 8619558-8619826 | Arabidopsis thaliana |
AT3G23870:five_prime_UTR:5 | 117 | Chr3: 8620136-8620252 | Arabidopsis thaliana |
AT3G23870:five_prime_UTR:4 | 407 | Chr3: 8619846-8620252 | Arabidopsis thaliana |
AT3G23870:five_prime_UTR:6 | 38 | Chr3: 8620619-8620656 | Arabidopsis thaliana |
Genes
DB identifier | Secondary Identifier | Symbol | Name | Length | Chromosome Location |
Organism . Short Name |
TAIR Computational Description | TAIR Curator Summary | TAIR Short Description | TAIR Aliases |
---|---|---|---|---|---|---|---|---|---|---|
AT3G23860 | locus:2076176 | AT3G23860 | 2482 | Chr3: 8616804-8619285 | A. thaliana | GTP-binding protein-like protein;(source:Araport11) | Encodes a GTP-binding related protein that acts as a negative regulator of pollen germination, pollen tube growth, and gametophyte senescence. | GTP-binding protein-related | GPR1 |
mRNAs
DB identifier | Length | Chromosome Location |
---|---|---|
AT3G23860.3 | 807 | Chr3: 8616953-8619285 |
AT3G23870.1 | 1553 | Chr3: 8619192-8621907 |
AT3G23870.2 | 1530 | Chr3: 8619555-8621907 |
AT3G23870.3 | 1588 | Chr3: 8619558-8621949 |
AT3G23870.4 | 1609 | Chr3: 8619846-8621949 |
AT3G23870.5 | 958 | Chr3: 8620619-8621907 |
Three Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT3G23870:three_prime_UTR:2 | 194 | Chr3: 8621756-8621949 | Arabidopsis thaliana |
AT3G23870:three_prime_UTR:1 | 152 | Chr3: 8621756-8621907 | Arabidopsis thaliana |
Proteins
Curated comments from UniProt
Type | Comment | Proteins |
---|---|---|
A0A1I9LPT2_ARATH | function | Acts as a Mg(2+) transporter. Can also transport other divalent cations such as Fe(2+), Sr(2+), Ba(2+), Mn(2+) and Co(2+) but to a much less extent than Mg(2+). |
NIPA1_ARATH | function | Acts as a Mg(2+) transporter. Can also transport other divalent cations such as Fe(2+), Sr(2+), Ba(2+), Mn(2+) and Co(2+) but to a much less extent than Mg(2+) (By similarity). |
A0A1I9LPT2_ARATH NIPA1_ARATH | similarity | Belongs to the NIPA (TC 2.A.7) family. |
NIPA1_ARATH | subcellular location | Recruited to the cell membrane in response to low extracellular magnesium. |
Function
Gene Ontology
cellular component | |
---|---|
plasma membrane | ECO |
early endosome | ECO |
molecular function | |
magnesium ion transmembrane transporter activity | ECO |
biological process | |
magnesium ion transport | ECO |
Interactions
Interaction Network
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Expression
Co-expression
Querying ATTED Service...
Data Source: ATTED-II |
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Top N
LS: LS is a monotonic transformation (negative logit) of MR index. Larger LS indicates stronger co-expression.
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