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Genomics
Overlapping Features
Genome features that overlap coordinates of this Gene
CDSs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT3G23600:CDS:1 | 148 | Chr3: 8473833-8473980 | Arabidopsis thaliana |
AT3G23600:CDS:2 | 22 | Chr3: 8474149-8474170 | Arabidopsis thaliana |
AT3G23600:CDS:3 | 127 | Chr3: 8474520-8474646 | Arabidopsis thaliana |
AT3G23600:CDS:4 | 91 | Chr3: 8474805-8474895 | Arabidopsis thaliana |
AT3G23600:CDS:5 | 90 | Chr3: 8474990-8475079 | Arabidopsis thaliana |
AT3G23600:CDS:7 | 101 | Chr3: 8475340-8475440 | Arabidopsis thaliana |
AT3G23600:CDS:8 | 141 | Chr3: 8475515-8475655 | Arabidopsis thaliana |
AT3G23600:CDS:1.1 | 148 | Chr3: 8473833-8473980 | Arabidopsis thaliana |
AT3G23600:CDS:2.1 | 22 | Chr3: 8474149-8474170 | Arabidopsis thaliana |
AT3G23600:CDS:3.1 | 127 | Chr3: 8474520-8474646 | Arabidopsis thaliana |
AT3G23600:CDS:4.1 | 91 | Chr3: 8474805-8474895 | Arabidopsis thaliana |
AT3G23600:CDS:6 | 81 | Chr3: 8474999-8475079 | Arabidopsis thaliana |
AT3G23600:CDS:7.1 | 101 | Chr3: 8475340-8475440 | Arabidopsis thaliana |
AT3G23600:CDS:8.1 | 141 | Chr3: 8475515-8475655 | Arabidopsis thaliana |
Exons
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT3G23590:exon:12 | 1279 | Chr3: 8472349-8473627 | Arabidopsis thaliana |
AT3G23600:exon:1 | 354 | Chr3: 8473627-8473980 | Arabidopsis thaliana |
AT3G23600:exon:6 | 90 | Chr3: 8474990-8475079 | Arabidopsis thaliana |
AT3G23600:exon:10 | 510 | Chr3: 8475515-8476024 | Arabidopsis thaliana |
AT3G23600:exon:2 | 206 | Chr3: 8473775-8473980 | Arabidopsis thaliana |
AT3G23600:exon:3 | 22 | Chr3: 8474149-8474170 | Arabidopsis thaliana |
AT3G23600:exon:4 | 127 | Chr3: 8474520-8474646 | Arabidopsis thaliana |
AT3G23600:exon:5 | 91 | Chr3: 8474805-8474895 | Arabidopsis thaliana |
AT3G23600:exon:7 | 81 | Chr3: 8474999-8475079 | Arabidopsis thaliana |
AT3G23600:exon:8 | 101 | Chr3: 8475340-8475440 | Arabidopsis thaliana |
AT3G23600:exon:9 | 374 | Chr3: 8475515-8475888 | Arabidopsis thaliana |
Five Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT3G23600:five_prime_UTR:1 | 206 | Chr3: 8473627-8473832 | Arabidopsis thaliana |
AT3G23600:five_prime_UTR:2 | 58 | Chr3: 8473775-8473832 | Arabidopsis thaliana |
Genes
DB identifier | Secondary Identifier | Symbol | Name | Length | Chromosome Location |
Organism . Short Name |
TAIR Computational Description | TAIR Curator Summary | TAIR Short Description | TAIR Aliases |
---|---|---|---|---|---|---|---|---|---|---|
AT3G23590 | locus:2088050 | RFR1 | REF4-related 1 | 6230 | Chr3: 8467398-8473627 | A. thaliana | REF4-related 1;(source:Araport11) | Encodes a protein shown to physically associate with the conserved transcriptional coregulatory complex, Mediator, and is involved in the regulation of phenylpropanoid homeostasis. Acts redundantly with REF4/MED5b (At2g48110). Required for expression of some dark-upregulated genes. RFR1 is the MED5a subunit of the mediator complex. | REF4-related 1 | MED33A, MED5A, RFR1 |
mRNAs
DB identifier | Length | Chromosome Location |
---|---|---|
AT3G23590.1 | 4328 | Chr3: 8467398-8473627 |
AT3G23600.1 | 1295 | Chr3: 8473627-8476024 |
AT3G23600.2 | 1002 | Chr3: 8473775-8475888 |
Three Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT3G23590:three_prime_UTR:1 | 158 | Chr3: 8473470-8473627 | Arabidopsis thaliana |
AT3G23600:three_prime_UTR:2 | 369 | Chr3: 8475656-8476024 | Arabidopsis thaliana |
AT3G23600:three_prime_UTR:1 | 233 | Chr3: 8475656-8475888 | Arabidopsis thaliana |
Function
Gene Ontology
cellular component | |
---|---|
No terms in this category. | |
molecular function | |
hydrolase activity | ECO |
biological process | |
No terms in this category. |
Interactions
Interaction Network
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Expression
Co-expression
Querying ATTED Service...
Data Source: ATTED-II |
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Top N
LS: LS is a monotonic transformation (negative logit) of MR index. Larger LS indicates stronger co-expression.
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