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Gene : RFR1 A. thaliana

DB identifier  ? AT3G23590 Secondary Identifier  ? locus:2088050
Name  ? REF4-related 1 Brief Description  REF4-related 1
TAIR Computational Description  REF4-related 1;(source:Araport11)
TAIR Curator Summary  Encodes a protein shown to physically associate with the conserved transcriptional coregulatory complex, Mediator, and is involved in the regulation of phenylpropanoid homeostasis. Acts redundantly with REF4/MED5b (At2g48110). Required for expression of some dark-upregulated genes. RFR1 is the MED5a subunit of the mediator complex.
TAIR Short Description  REF4-related 1
TAIR Aliases  MED33A, MED5A, RFR1

1 Gene Rifs

1 Organism

11 Publications

0 Synonyms

Genomics

Genome feature

Region: gene ? Length: 6230  
Location: Chr3:8467398-8473627

Gene models - RFR1 AT3G23590

? Gene models

Transcripts: 1  Exons: 12  Introns: 11 

Overlapping Features

? Genome features that overlap coordinates of this Gene

13 Child Features

0 Cross References

0 Downstream Intergenic Region

0 Located Features

1 Upstream Intergenic Region

Proteins

Curated comments from UniProt

Type Comment Proteins
MD33A_ARATH function Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. Involved in the repression of phenylpropanoid biosynthesis. May compete with MED33B for common binding partners or for occupancy in Mediator.
MD33A_ARATH similarity Belongs to the Mediator complex subunit 33 family.

1 Proteins

Function

Gene Ontology

cellular component
mediator complex  ? ECO  
molecular function
No terms in this category.
biological process
phenylpropanoid metabolic process  ? ECO  
regulation of phenylpropanoid metabolic process  ? ECO  

Interactions

Interaction Network

Expression

eFP Visualization

Data Source: BAR




Co-expression

Querying ATTED Service...
Data Source: ATTED-II
Top N
LS: LS is a monotonic transformation (negative logit) of MR index. Larger LS indicates stronger co-expression.

 

Homology

Phytozome Homologs

Data Source: Phytozome


0 Homologues

 

Other

8 Data Sets