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Genomics
Overlapping Features
Genome features that overlap coordinates of this Gene
CDSs: 16, Exons: 10, Five Prime UTRs: 5, mRNAs: 4, Three Prime UTRs: 3, Transposable Element: 1, Transposon Fragment: 1
CDSs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT3G22220:CDS:4 | 80 | Chr3: 7839808-7839887 | Arabidopsis thaliana |
AT3G22220:CDS:3 | 194 | Chr3: 7839979-7840172 | Arabidopsis thaliana |
AT3G22220:CDS:2 | 205 | Chr3: 7840262-7840466 | Arabidopsis thaliana |
AT3G22220:CDS:1 | 1807 | Chr3: 7840552-7842358 | Arabidopsis thaliana |
AT3G22220:CDS:4.1 | 80 | Chr3: 7839808-7839887 | Arabidopsis thaliana |
AT3G22220:CDS:3.1 | 194 | Chr3: 7839979-7840172 | Arabidopsis thaliana |
AT3G22220:CDS:2.1 | 205 | Chr3: 7840262-7840466 | Arabidopsis thaliana |
AT3G22220:CDS:1.1 | 1807 | Chr3: 7840552-7842358 | Arabidopsis thaliana |
AT3G22220:CDS:4.2 | 80 | Chr3: 7839808-7839887 | Arabidopsis thaliana |
AT3G22220:CDS:3.2 | 194 | Chr3: 7839979-7840172 | Arabidopsis thaliana |
AT3G22220:CDS:2.2 | 205 | Chr3: 7840262-7840466 | Arabidopsis thaliana |
AT3G22220:CDS:1.2 | 1807 | Chr3: 7840552-7842358 | Arabidopsis thaliana |
AT3G22220:CDS:4.3 | 80 | Chr3: 7839808-7839887 | Arabidopsis thaliana |
AT3G22220:CDS:3.3 | 194 | Chr3: 7839979-7840172 | Arabidopsis thaliana |
AT3G22220:CDS:2.3 | 205 | Chr3: 7840262-7840466 | Arabidopsis thaliana |
AT3G22220:CDS:1.3 | 1807 | Chr3: 7840552-7842358 | Arabidopsis thaliana |
Exons
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT3G22220:exon:4 | 1825 | Chr3: 7840552-7842376 | Arabidopsis thaliana |
AT3G22220:exon:1 | 276 | Chr3: 7842599-7842874 | Arabidopsis thaliana |
AT3G22220:exon:10 | 384 | Chr3: 7839504-7839887 | Arabidopsis thaliana |
AT3G22220:exon:3 | 2323 | Chr3: 7840552-7842874 | Arabidopsis thaliana |
AT3G22220:exon:9 | 5 | Chr3: 7839555-7839559 | Arabidopsis thaliana |
AT3G22220:exon:8 | 240 | Chr3: 7839648-7839887 | Arabidopsis thaliana |
AT3G22220:exon:7 | 194 | Chr3: 7839979-7840172 | Arabidopsis thaliana |
AT3G22220:exon:6 | 205 | Chr3: 7840262-7840466 | Arabidopsis thaliana |
AT3G22220:exon:5 | 1808 | Chr3: 7840552-7842359 | Arabidopsis thaliana |
AT3G22220:exon:2 | 183 | Chr3: 7842599-7842781 | Arabidopsis thaliana |
Five Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT3G22220:five_prime_UTR:4 | 18 | Chr3: 7842359-7842376 | Arabidopsis thaliana |
AT3G22220:five_prime_UTR:1 | 276 | Chr3: 7842599-7842874 | Arabidopsis thaliana |
AT3G22220:five_prime_UTR:3 | 516 | Chr3: 7842359-7842874 | Arabidopsis thaliana |
AT3G22220:five_prime_UTR:5 | 1 | Chr3: 7842359-7842359 | Arabidopsis thaliana |
AT3G22220:five_prime_UTR:2 | 183 | Chr3: 7842599-7842781 | Arabidopsis thaliana |
mRNAs
DB identifier | Length | Chromosome Location |
---|---|---|
AT3G22220.1 | 2867 | Chr3: 7839504-7842874 |
AT3G22220.4 | 2884 | Chr3: 7839504-7842874 |
AT3G22220.3 | 3106 | Chr3: 7839504-7842874 |
AT3G22220.2 | 2635 | Chr3: 7839555-7842781 |
Three Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT3G22220:three_prime_UTR:3 | 304 | Chr3: 7839504-7839807 | Arabidopsis thaliana |
AT3G22220:three_prime_UTR:2 | 5 | Chr3: 7839555-7839559 | Arabidopsis thaliana |
AT3G22220:three_prime_UTR:1 | 160 | Chr3: 7839648-7839807 | Arabidopsis thaliana |
Transposable Elements
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT3TE32910 | 323 | Chr3: 7841286-7841608 | Arabidopsis thaliana |
Transposon Fragments
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT3TE32910:transposon_fragment:1 | 323 | Chr3: 7841286-7841608 | Arabidopsis thaliana |
Function
Gene Ontology
cellular component | |
---|---|
nucleus | ECO |
molecular function | |
DNA binding | ECO |
metal ion binding | ECO |
protein dimerization activity | ECO |
biological process | |
No terms in this category. |
Expression
Co-expression
Querying ATTED Service...
Data Source: ATTED-II |
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Top N
LS: LS is a monotonic transformation (negative logit) of MR index. Larger LS indicates stronger co-expression.
Waiting for results...