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Genomics
Transcript | Exons | Introns | ||
---|---|---|---|---|
AT3G22142.1
AT3G22142.1
4555 |
|
Overlapping Features
Genome features that overlap coordinates of this Gene
CDSs: 10, Exons: 12, Five Prime UTRs: 2, Gene: 1, mRNAs: 6, Three Prime UTRs: 4, Transposable Elements: 3, Transposon Fragments: 3
CDSs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT3G22125:CDS:2 | 1177 | Chr3: 7803890-7805066 | Arabidopsis thaliana |
AT3G22125:CDS:8 | 755 | Chr3: 7806657-7807411 | Arabidopsis thaliana |
AT3G22125:CDS:1 | 214 | Chr3: 7803890-7804103 | Arabidopsis thaliana |
AT3G22125:CDS:6 | 1820 | Chr3: 7805592-7807411 | Arabidopsis thaliana |
AT3G22125:CDS:4 | 2662 | Chr3: 7803890-7806551 | Arabidopsis thaliana |
AT3G22125:CDS:9 | 575 | Chr3: 7806837-7807411 | Arabidopsis thaliana |
AT3G22125:CDS:3 | 1657 | Chr3: 7803890-7805546 | Arabidopsis thaliana |
AT3G22125:CDS:7 | 1595 | Chr3: 7805817-7807411 | Arabidopsis thaliana |
AT3G22125:CDS:5 | 3522 | Chr3: 7803890-7807411 | Arabidopsis thaliana |
AT3G22142:CDS:1 | 4443 | Chr3: 7803604-7808046 | Arabidopsis thaliana |
Exons
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT3G22125:exon:1 | 1729 | Chr3: 7803338-7805066 | Arabidopsis thaliana |
AT3G22125:exon:8 | 1089 | Chr3: 7806657-7807745 | Arabidopsis thaliana |
AT3G22125:exon:10 | 115 | Chr3: 7807776-7807890 | Arabidopsis thaliana |
AT3G22125:exon:2 | 675 | Chr3: 7803429-7804103 | Arabidopsis thaliana |
AT3G22125:exon:6 | 1820 | Chr3: 7805592-7807411 | Arabidopsis thaliana |
AT3G22125:exon:4 | 2662 | Chr3: 7803890-7806551 | Arabidopsis thaliana |
AT3G22125:exon:9 | 575 | Chr3: 7806837-7807411 | Arabidopsis thaliana |
AT3G22125:exon:3 | 1657 | Chr3: 7803890-7805546 | Arabidopsis thaliana |
AT3G22125:exon:7 | 1595 | Chr3: 7805817-7807411 | Arabidopsis thaliana |
AT3G22125:exon:5 | 3856 | Chr3: 7803890-7807745 | Arabidopsis thaliana |
AT3G22125:exon:11 | 281 | Chr3: 7807776-7808056 | Arabidopsis thaliana |
AT3G22142:exon:1 | 4555 | Chr3: 7803492-7808046 | Arabidopsis thaliana |
Five Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT3G22125:five_prime_UTR:1 | 552 | Chr3: 7803338-7803889 | Arabidopsis thaliana |
AT3G22125:five_prime_UTR:2 | 461 | Chr3: 7803429-7803889 | Arabidopsis thaliana |
Genes
DB identifier | Secondary Identifier | Symbol | Name | Length | Chromosome Location |
Organism . Short Name |
TAIR Computational Description | TAIR Curator Summary | TAIR Short Description | TAIR Aliases |
---|---|---|---|---|---|---|---|---|---|---|
AT3G22125 | AT3G22125 | 4719 | Chr3: 7803338-7808056 | A. thaliana | transmembrane protein;(source:Araport11) | NULL |
mRNAs
DB identifier | Length | Chromosome Location |
---|---|---|
AT3G22125.1 | 2933 | Chr3: 7803338-7807890 |
AT3G22125.2 | 2495 | Chr3: 7803429-7807411 |
AT3G22125.5 | 3237 | Chr3: 7803890-7807411 |
AT3G22125.4 | 3252 | Chr3: 7803890-7807411 |
AT3G22125.3 | 4137 | Chr3: 7803890-7808056 |
AT3G22142.1 | 4555 | Chr3: 7803492-7808046 |
Three Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT3G22125:three_prime_UTR:2 | 115 | Chr3: 7807776-7807890 | Arabidopsis thaliana |
AT3G22125:three_prime_UTR:1 | 334 | Chr3: 7807412-7807745 | Arabidopsis thaliana |
AT3G22125:three_prime_UTR:3 | 281 | Chr3: 7807776-7808056 | Arabidopsis thaliana |
AT3G22142:three_prime_UTR:1 | 112 | Chr3: 7803492-7803603 | Arabidopsis thaliana |
Transposable Elements
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT3TE32775 | 127 | Chr3: 7805457-7805583 | Arabidopsis thaliana |
AT3TE32780 | 155 | Chr3: 7806212-7806366 | Arabidopsis thaliana |
AT3TE32785 | 350 | Chr3: 7806866-7807215 | Arabidopsis thaliana |
Transposon Fragments
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT3TE32775:transposon_fragment:1 | 127 | Chr3: 7805457-7805583 | Arabidopsis thaliana |
AT3TE32780:transposon_fragment:1 | 155 | Chr3: 7806212-7806366 | Arabidopsis thaliana |
AT3TE32785:transposon_fragment:1 | 350 | Chr3: 7806866-7807215 | Arabidopsis thaliana |
Proteins
Curated comments from UniProt
Type | Comment | Proteins |
---|---|---|
Q9LIE8_ARATH | similarity | Belongs to the plant LTP family. PEARLI1 subfamily. |
Function
Gene Ontology
cellular component | |
---|---|
No terms in this category. | |
molecular function | |
No terms in this category. | |
biological process | |
No terms in this category. |
Interactions
Interaction Network
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Expression
Co-expression
Querying ATTED Service...
Data Source: ATTED-II |
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Top N
LS: LS is a monotonic transformation (negative logit) of MR index. Larger LS indicates stronger co-expression.
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