External Links
Genomics
Overlapping Features
Genome features that overlap coordinates of this Gene
Antisense lncRNA: 1, CDSs: 21, Exons: 17, Five Prime UTRs: 4, Genes: 2, mRNAs: 3, Three Prime UTRs: 2
CDSs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT3G21810:CDS:1 | 133 | Chr3: 7684852-7684984 | Arabidopsis thaliana |
AT3G21810:CDS:3 | 144 | Chr3: 7686174-7686317 | Arabidopsis thaliana |
AT3G21810:CDS:4 | 34 | Chr3: 7686441-7686474 | Arabidopsis thaliana |
AT3G21810:CDS:5 | 142 | Chr3: 7686581-7686722 | Arabidopsis thaliana |
AT3G21810:CDS:6 | 57 | Chr3: 7686858-7686914 | Arabidopsis thaliana |
AT3G21810:CDS:7 | 98 | Chr3: 7686991-7687088 | Arabidopsis thaliana |
AT3G21810:CDS:8 | 72 | Chr3: 7687220-7687291 | Arabidopsis thaliana |
AT3G21810:CDS:9 | 227 | Chr3: 7687374-7687600 | Arabidopsis thaliana |
AT3G21810:CDS:10 | 200 | Chr3: 7687685-7687884 | Arabidopsis thaliana |
AT3G21810:CDS:11 | 138 | Chr3: 7688047-7688184 | Arabidopsis thaliana |
AT3G21810:CDS:12 | 69 | Chr3: 7688292-7688360 | Arabidopsis thaliana |
AT3G21810:CDS:2 | 205 | Chr3: 7686113-7686317 | Arabidopsis thaliana |
AT3G21810:CDS:4.1 | 34 | Chr3: 7686441-7686474 | Arabidopsis thaliana |
AT3G21810:CDS:5.1 | 142 | Chr3: 7686581-7686722 | Arabidopsis thaliana |
AT3G21810:CDS:6.1 | 57 | Chr3: 7686858-7686914 | Arabidopsis thaliana |
AT3G21810:CDS:7.1 | 98 | Chr3: 7686991-7687088 | Arabidopsis thaliana |
AT3G21810:CDS:8.1 | 72 | Chr3: 7687220-7687291 | Arabidopsis thaliana |
AT3G21810:CDS:9.1 | 227 | Chr3: 7687374-7687600 | Arabidopsis thaliana |
AT3G21810:CDS:10.1 | 200 | Chr3: 7687685-7687884 | Arabidopsis thaliana |
AT3G21810:CDS:11.1 | 138 | Chr3: 7688047-7688184 | Arabidopsis thaliana |
AT3G21810:CDS:12.1 | 69 | Chr3: 7688292-7688360 | Arabidopsis thaliana |
Exons
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT3G21810:exon:1 | 225 | Chr3: 7684356-7684580 | Arabidopsis thaliana |
AT3G21810:exon:3 | 252 | Chr3: 7684733-7684984 | Arabidopsis thaliana |
AT3G21810:exon:5 | 144 | Chr3: 7686174-7686317 | Arabidopsis thaliana |
AT3G21810:exon:15 | 325 | Chr3: 7688292-7688616 | Arabidopsis thaliana |
AT3G21810:exon:2 | 151 | Chr3: 7684430-7684580 | Arabidopsis thaliana |
AT3G21810:exon:4 | 1585 | Chr3: 7684733-7686317 | Arabidopsis thaliana |
AT3G21810:exon:6 | 34 | Chr3: 7686441-7686474 | Arabidopsis thaliana |
AT3G21810:exon:7 | 142 | Chr3: 7686581-7686722 | Arabidopsis thaliana |
AT3G21810:exon:8 | 57 | Chr3: 7686858-7686914 | Arabidopsis thaliana |
AT3G21810:exon:9 | 98 | Chr3: 7686991-7687088 | Arabidopsis thaliana |
AT3G21810:exon:10 | 72 | Chr3: 7687220-7687291 | Arabidopsis thaliana |
AT3G21810:exon:11 | 227 | Chr3: 7687374-7687600 | Arabidopsis thaliana |
AT3G21810:exon:12 | 200 | Chr3: 7687685-7687884 | Arabidopsis thaliana |
AT3G21810:exon:13 | 138 | Chr3: 7688047-7688184 | Arabidopsis thaliana |
AT3G21810:exon:14 | 69 | Chr3: 7688292-7688360 | Arabidopsis thaliana |
AT3G04185:exon:1 | 821 | Chr3: 7685374-7686194 | Arabidopsis thaliana |
AT3G21820:exon:14 | 312 | Chr3: 7688434-7688745 | Arabidopsis thaliana |
Five Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT3G21810:five_prime_UTR:1 | 225 | Chr3: 7684356-7684580 | Arabidopsis thaliana |
AT3G21810:five_prime_UTR:3 | 119 | Chr3: 7684733-7684851 | Arabidopsis thaliana |
AT3G21810:five_prime_UTR:2 | 151 | Chr3: 7684430-7684580 | Arabidopsis thaliana |
AT3G21810:five_prime_UTR:4 | 1380 | Chr3: 7684733-7686112 | Arabidopsis thaliana |
Genes
DB identifier | Secondary Identifier | Symbol | Name | Length | Chromosome Location |
Organism . Short Name |
TAIR Computational Description | TAIR Curator Summary | TAIR Short Description | TAIR Aliases |
---|---|---|---|---|---|---|---|---|---|---|
AT3G04185 | AT3G04185 | 1135 | Chr3: 7685060-7686194 | A. thaliana | Natural antisense transcript overlaps with AT3G21810;(source:Araport11) | NULL | ||||
AT3G21820 | locus:2093059 | ATXR2 | histone-lysine N-methyltransferase ATXR2 | 3134 | Chr3: 7688434-7691567 | A. thaliana | histone-lysine N-methyltransferase ATXR2;(source:Araport11) | Histone lysine methyltransferase that promotes the accumulation of histone H3 proteins that are trimethylated on lysine 36 (H3K36me3) during callus formation. It is recruited to LBD promoters via interaction with ARFs. | histone-lysine N-methyltransferase ATXR2 | ATXR2, SDG36 |
mRNAs
DB identifier | Length | Chromosome Location |
---|---|---|
AT3G21810.1 | 1914 | Chr3: 7684356-7688616 |
AT3G21810.2 | 2773 | Chr3: 7684430-7688360 |
AT3G21820.1 | 1740 | Chr3: 7688434-7691567 |
Three Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT3G21810:three_prime_UTR:1 | 256 | Chr3: 7688361-7688616 | Arabidopsis thaliana |
AT3G21820:three_prime_UTR:1 | 195 | Chr3: 7688434-7688628 | Arabidopsis thaliana |
Function
Gene Ontology
cellular component | |
---|---|
No terms in this category. | |
molecular function | |
DNA binding | ECO |
metal ion binding | ECO |
biological process | |
No terms in this category. |
Interactions
Interaction Network
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Expression
Co-expression
Querying ATTED Service...
Data Source: ATTED-II |
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Top N
LS: LS is a monotonic transformation (negative logit) of MR index. Larger LS indicates stronger co-expression.
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