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Gene : EMB2729 A. thaliana

DB identifier  ? AT3G20440 Secondary Identifier  ? locus:2092349
Name  ? EMBRYO DEFECTIVE 2729 Brief Description  Alpha amylase family protein
TAIR Computational Description  Alpha amylase family protein;(source:Araport11)
TAIR Curator Summary  Encodes BE1, a putative glycoside hydrolase. Involved in organogenesis and somatic embryogenesis by regulating carbohydrate metabolism. Mutation in BE1 has pleotrophic effect on the whole plant development.
TAIR Short Description  Alpha amylase family protein
TAIR Aliases  BE1, EMB2729

2 Gene Rifs

1 Organism

15 Publications

0 Synonyms

Genomics

Genome feature

Region: gene ? Length: 7296  
Location: Chr3:7123182-7130477 reverse strand

Gene models - EMB2729 AT3G20440

? Gene models

Transcripts: 3  Exons: 62  Introns: 59 

Overlapping Features

? Genome features that overlap coordinates of this Gene

31 Child Features

0 Cross References

0 Downstream Intergenic Region

0 Located Features

1 Upstream Intergenic Region

Proteins

Curated comments from UniProt

Type Comment Proteins
GLGB3_ARATH-2 GLGB3_ARATH GLGB3_ARATH-3 function Catalyzes the formation of the alpha-1,6-glucosidic linkages in starch by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position. Essential during embryogenesis.
GLGB3_ARATH-2 GLGB3_ARATH GLGB3_ARATH-3 pathway Glycan biosynthesis; starch biosynthesis.
GLGB3_ARATH-2 GLGB3_ARATH GLGB3_ARATH-3 similarity Belongs to the glycosyl hydrolase 13 family. GlgB subfamily.
GLGB3_ARATH-2 GLGB3_ARATH GLGB3_ARATH-3 tissue specificity Mostly expressed in flowers and inflorescence, and, to a lower extent, in seedlings, roots, stems, leaves, siliques and seeds.

3 Proteins

Function

Gene Ontology

cellular component
chloroplast stroma  ? ECO  
amyloplast  ? ECO  
plastid  ? ECO  
chloroplast  ? ECO  
molecular function
cation binding  ? ECO  
1,4-alpha-glucan branching enzyme activity  ? ECO  
biological process
carbohydrate metabolic process  ? ECO  
post-embryonic development  ? ECO  
glycogen biosynthetic process  ? ECO  
starch biosynthetic process  ? ECO  

Interactions

Interaction Network

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Expression

eFP Visualization

Data Source: BAR




Co-expression

Querying ATTED Service...
Data Source: ATTED-II
Top N
LS: LS is a monotonic transformation (negative logit) of MR index. Larger LS indicates stronger co-expression.

 

Homology

Phytozome Homologs

Data Source: Phytozome


0 Homologues

 

Other

7 Data Sets