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Gene : RTL2 A. thaliana

DB identifier  ? AT3G20420 Secondary Identifier  ? locus:2092409
Name  ? RNAse THREE-like protein 2 Brief Description  RNAse THREE-like protein 2
TAIR Computational Description  RNAse THREE-like protein 2;(source:Araport11)
TAIR Curator Summary  double-stranded RNA binding / ribonuclease III. Required for 3' external transcribed spacer (ETS) cleavage of the pre-rRNA in vivo. Localizes in the nucleus and cytoplasm.
TAIR Short Description  RNAse THREE-like protein 2
TAIR Aliases  ATRTL2, RTL2

3 Gene Rifs

1 Organism

12 Publications

0 Synonyms

Genomics

Genome feature

Region: gene ? Length: 1833  
Location: Chr3:7119191-7121023 reverse strand

Gene models - RTL2 AT3G20420

? Gene models

Transcripts: 1  Exons: 4  Introns: 3 

Overlapping Features

? Genome features that overlap coordinates of this Gene

5 Child Features

1 Cross References

1 Downstream Intergenic Region

0 Located Features

1 Upstream Intergenic Region

Proteins

Curated comments from UniProt

Type Comment Proteins
RTL2_ARATH developmental stage Expressed in siliques from 0 to 10 days after fertilization (DAF). Levels decrease at 13 DAF and disappear at 16 DAF. Expressed early in seed germination from 6 hours to 48 hours after seed imbibition.
RTL2_ARATH function Ribonuclease that cleaves double-stranded RNA (dsRNA). Required for 3'-external transcribed spacer (ETS) cleavage of the pre-rRNA precursors. May promote the production of 21 nucleotide small interfering RNA (siRNA) during post-transcriptional gene silencing (PTGS).
RTL2_ARATH tissue specificity Expressed in seeds, leaves and flower buds.

1 Proteins

Function

Gene Ontology

cellular component
nucleus  ? ECO  
cytoplasm  ? ECO  
molecular function
ribonuclease III activity  ? ECO  
metal ion binding  ? ECO  
RNA binding  ? ECO  
biological process
rRNA processing  ? ECO  

Interactions

Interaction Network

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Expression

eFP Visualization

Data Source: BAR




Co-expression

Querying ATTED Service...
Data Source: ATTED-II
Top N
LS: LS is a monotonic transformation (negative logit) of MR index. Larger LS indicates stronger co-expression.

 

Homology

Phytozome Homologs

Data Source: Phytozome


0 Homologues

 

Other

9 Data Sets