help  | faq  | software  | BAR
Hide

Oops!

Error: 403
Hide Your session has expired. If you were not logged in, your data (including query history and any lists you made) has been cleared.Your session has expired. If you were not logged in, your data (including query history and any lists you made) has been cleared.

Gene : AT3G19800 A. thaliana

DB identifier  ? AT3G19800 Secondary Identifier  ? locus:2092256
Brief Description  E3 ubiquitin-protein ligase, putative (DUF177)
TAIR Computational Description  E3 ubiquitin-protein ligase, putative (DUF177);(source:Araport11)
TAIR Curator Summary  Encodes the DUF177B version of the two DUF177 proteins in Arabidopsis. This version differs from DUF177A in containing a 23 aa insertion compared to the DUF177A sequence.
TAIR Short Description  Protein of unknown function (DUF177)
TAIR Aliases  DUF177B

0 Gene Rifs

1 Organism

6 Publications

0 Synonyms

Genomics

Genome feature

Region: gene ? Length: 1600  
Location: Chr3:6876043-6877642

Gene models - AT3G19800 AT3G19800

? Gene models

Transcripts: 2  Exons: 14  Introns: 12 

Overlapping Features

? Genome features that overlap coordinates of this Gene

11 Child Features

1 Cross References

0 Downstream Intergenic Region

0 Located Features

1 Upstream Intergenic Region

Proteins

Curated comments from UniProt

Type Comment Proteins
YCED2_ARATH YCED2_ARATH-2 function May play a role in synthesis, processing and/or stability of 23S rRNA.
YCED2_ARATH YCED2_ARATH-2 similarity Belongs to the DUF177 domain family.

3 Proteins

Function

Gene Ontology

cellular component
chloroplast  ? ECO  
molecular function
No terms in this category.
biological process
ribosome biogenesis  ? ECO  

Interactions

Interaction Network

Show the following interaction types:
Reset view
Show in table format
Export graph

Click on a gene to get more info about it.

Expression

eFP Visualization

Data Source: BAR




Co-expression

Querying ATTED Service...
Data Source: ATTED-II
Top N
LS: LS is a monotonic transformation (negative logit) of MR index. Larger LS indicates stronger co-expression.

 

Homology

Phytozome Homologs

Data Source: Phytozome


0 Homologues

 

Other

7 Data Sets